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BaseInfo

ncRNA ID	novel_zma_miR12414
Species	Zea mays
Class	miRNA
Genome position	Chr1:227386885-227387015 [+]
Reference genome	RefGen_v4
Source	SRR5105961
Length	21
Mature sequence(if miRNA)	111 - CUCUUCUGGAUUGGUGUAACC - 131
Stem-loop(if miRNA)	--         C       -   AU       A A             A     AAAA     A  C   UUACACUAA CUAGAAG GGA  UUGGAGG G UUAAAUCCCCUCC AGUCA    UGACU GG C   ||||||||| ||||||| |||  ||||||| | ||||||||||||| |||||    ||||| ||   AAUGUGGUU GGUCUUC CCU  AACCUCC C AAUUUAGGGGAGG UCAGU    ACUGA CC C CC         A       U   --       C A             A     AAAA     A  U
Stem-loop sequence	UUACACUAACCUAGAAGGGAAUUUGGAGGAGAUUAAAUCCCCUCCAAGUCAAAAAUGACUAGGCCCUCCAAGUCAAAAAUGACUAGGAGGGGAUUUAAACCCCUCCAAUCCUCUUCUGGAUUGGUGUAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT063242.2	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   |||||=||||||||||||||| targets:484   GGUUAUACCAAUCCAGAAGAG   504 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0042E19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   |||||||=|||||||||||=| targets:454   GGUUACAUCAAUCCAGAAGGG   474 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   |||||||=|||||||||||=| targets:454   GGUUACAUCAAUCCAGAAGGG   474 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656925.2	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   |||||||||||||||*||||| targets:30   GGUUACACCAAUCCAUAAGAG   50 Target Full Sequence	1.5	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT060810.1	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   ||||||||||||||||||*|* targets:1496   GGUUACACCAAUCCAGAAAAA   1516 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0053C16 mRNA, complete cds	NA	coding protein	psRNATarget
BT042688.1	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   ||||||||||||||||||*|* targets:1597   GGUUACACCAAUCCAGAAAAA   1617 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0008P01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148650.1	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   ||||||||||||||||||*|* targets:1597   GGUUACACCAAUCCAGAAAAA   1617 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 75B1 (umc2700), mRNA	NA	coding protein	psRNATarget
EU971133.1	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   ||||||||||||||||||*|* targets:1493   GGUUACACCAAUCCAGAAAAA   1513 Target Full Sequence	2.5	Zea mays clone 358078 mRNA sequence	NA	coding protein	psRNATarget
XM_008672439.2	ncRNA:21   CCAAUGUGGUUAGGUCUUCUC   1   **||=|||||*|||||||||| targets:600   UCUUGCACCACUCCAGAAGAG   620 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103647937 (LOC103647937), mRNA	NA	coding protein	psRNATarget