A ncRNA database for oil producing plants

Search result

ncRNA ID	osa-miRf10838-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - UCCUUGAGGACGUACCAUGAGGUAC - NA
Stem-loop(if miRNA)	C C CUUUUUC U UUU UCUUGAUACUU AAUU UAUGGUCCUUGAGGA GUACCAUGAGGUACCA UA UGUAAA AGUAUC U \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\| UUAA AUGCCAGGAACUCCU CAUGGUACUCCAUGGU AU ACAUUU AACCAU G A C -UUUUAA C -UA GGAGUACCAUG
Stem-loop sequence	AAUUCUAUGGUCCUUGAGGACGUACCAUGAGGUACCACUUUUUCUAUUGUAAAUUUAGUAUCUCUUGAUACUUUGGUACCAUGAGGUACCAAAUUUUACACUAAAUUUUUGGUACCUCAUGGUACCUCCUCAAGGACCGUAAAAUU

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

AK242475.1

ncRNA:25	CAUGGAGUACCAUGCAGGAGUUCCU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|
targets:1303	GUACCUCAUGGUACCUCCUCAAGGA	1327

1.5

Oryza sativa Japonica Group cDNA, clone: J080303E02, full insert sequence

coding protein

AK119399.1

ncRNA:25	CAUGGAGUACCAUGCAGGAGUUCCU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|
targets:643	GUACCUCAUGGUACCUCCUCAAGGA	667

1.5

Oryza sativa Japonica Group cDNA clone:001-132-D12, full insert sequence

coding protein

XM_015777564.1

ncRNA:25	CAUGGAGUACCAUGCAGGAGUUCCU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|
targets:653	GUACCUCAUGGUACCUCCUCAAGGA	677

1.5

PREDICTED: Oryza sativa Japonica Group B3 domain-containing protein Os03g0619600 (LOC4333464), transcript variant X2, mRNA

B3 domain-containing protein Os03g0619600(LOC4333464)

coding protein

XM_015777563.1

ncRNA:25	CAUGGAGUACCAUGCAGGAGUUCCU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|
targets:653	GUACCUCAUGGUACCUCCUCAAGGA	677

1.5

PREDICTED: Oryza sativa Japonica Group B3 domain-containing protein Os03g0619600 (LOC4333464), transcript variant X1, mRNA

B3 domain-containing protein Os03g0619600(LOC4333464)

coding protein