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BaseInfo

ncRNA ID	novel_zma_miR12405
Species	Zea mays
Class	miRNA
Genome position	Chr1:216166081-216166193 [+]
Reference genome	RefGen_v4
Source	SRR5105961
Length	24
Mature sequence(if miRNA)	90 - AUAUGGAUUGGGUAGAACCGAACA - 113
Stem-loop(if miRNA)	--       AUU                   A    ---     A AGA    -   AGA   UUCGGUU   UUCAAUCCAUAUAAAUUAA GGGA   UUAAU C   UUGG AAG   U   |||||||   ||||||||||||||||||| ||||   ||||| |   |||| |||   U   AAGCCAA   GGGUUAGGUAUAUUUAAUU CUCU   AAUUA G   GAUC UUC   U AC       GAU                   -    CAA     - --G    A   AGU
Stem-loop sequence	UUCGGUUAUUUUCAAUCCAUAUAAAUUAAAGGGAUUAAUACAGAUUGGAAGAGAUUUUGACUUACUAGGGAUUAAAACUCUCUUAAUUUAUAUGGAUUGGGUAGAACCGAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ068230.1	ncRNA:24   ACAAGCCAAGAU-GGGUUAGGUAUA   1   ||||||||||||-|||||||||||| targets:34   UGUUCGGUUCUAGCCCAAUCCAUAU   58 Target Full Sequence	3.0	TSA: Zea mays contig03865, mRNA sequence	NA	coding protein	psRNATarget
EZ061352.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:112   UGUUCGGUUCUACCCCAAUCCAUAU   136 Target Full Sequence	3.0	TSA: Zea mays contig62474, mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:359   UGUUCGGUUCUACCCCAAUCCAUAU   383 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:698   UGUUCGGUUCUACCCCAAUCCAUAU   722 Target Full Sequence	3.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:840   UGUUCGGUUCUACCCCAAUCCAUAU   864 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:786   UGUUCGGUUCUACCCCAAUCCAUAU   810 Target Full Sequence	3.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:786   UGUUCGGUUCUACCCCAAUCCAUAU   810 Target Full Sequence	3.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:787   UGUUCGGUUCUACCCCAAUCCAUAU   811 Target Full Sequence	3.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU961636.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:1043   UGUUCGGUUCUACCCCAAUCCAUAU   1067 Target Full Sequence	3.0	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:859   UGUUCGGUUCUACCCCAAUCCAUAU   883 Target Full Sequence	3.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:885   UGUUCGGUUCUACCCCAAUCCAUAU   909 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:1904   UGUUCGGUUCUACCCCAAUCCAUAU   1928 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:1904   UGUUCGGUUCUACCCCAAUCCAUAU   1928 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   ACAAGCCAAGAUGG-GUUAGGUAUA   1   ||||||||||||||-|||||||||| targets:1544   UGUUCGGUUCUACCUCAAUCCAUAU   1568 Target Full Sequence	3.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:1677   UGUUCGGUUCUACCCCAAUCCAUAU   1701 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   ACAAGCCAAGAUGG-GUUAGGUAUA   1   ||||||||||||||-|||||||||| targets:215   UGUUCGGUUCUACCUCAAUCCAUAU   239 Target Full Sequence	3.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   ACAAGCCAAGAUGGG-UUAGGUAUA   1   |||||||||||||||-||||||||| targets:891   UGUUCGGUUCUACCCCAAUCCAUAU   915 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   ACAAGCCAAGAU-GGGUUAGGUAUA   1   **||||||||||-|||||||||||| targets:624   CUUUCGGUUCUAACCCAAUCCAUAU   648 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget