Search result

BaseInfo

ncRNA ID	novel_zma_miR12402
Species	Zea mays
Class	miRNA
Genome position	Chr1:249887032-249887150 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	96 - GUUUGGUGGACAUGUAAUUGGAGG - 119
Stem-loop(if miRNA)	--            U U                U            C    C       A   GUUUGGUGGACA G AAUUGGAGGGGAUCCA GGGGGAGUAAUC CCUC CUAUUCA A   |||||||||||| | |||||||||||||||| |||||||||||| |||| |||||||   UAAACCACCUGU C UUAACCUCCCCUAGGU UCCCCUCAUUAG GGAG GAUAAGU U AC            C C                -            A    A       U
Stem-loop sequence	GUUUGGUGGACAUGUAAUUGGAGGGGAUCCAUGGGGGAGUAAUCCCCUCCCUAUUCAAAUUUGAAUAGAGAGGAGAUUACUCCCCUUGGAUCCCCUCCAAUUCCCUGUCCACCAAAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942647.1	ncRNA:24   GGAGGUUAAUGUACAGGUGGUUUG   1   *||=|||||*|||||||||||||| targets:526   ACUUCAAUUUCAUGUCCACCAAAC   549 Target Full Sequence	1.0	Zea mays clone 1526747 mRNA sequence	NA	coding protein	psRNATarget
LQ235127.1	ncRNA:24   GGAGGUUAAUGUACAGGUGGUUUG   1   |||||||||*|||||*|||||||| targets:103   CCUCCAAUUCCAUGUGCACCAAAC   126 Target Full Sequence	2.5	Sequence 1122 from Patent EP2985353	NA	coding protein	psRNATarget
JB163458.1	ncRNA:24   GGAGGUUAAUGUACAGGUGGUUUG   1   |||||||||*|||||*|||||||| targets:103   CCUCCAAUUCCAUGUGCACCAAAC   126 Target Full Sequence	2.5	Sequence 1122 from Patent EP2559767	NA	coding protein	psRNATarget
HI402997.1	ncRNA:24   GGAGGUUAAUGUACAGGUGGUUUG   1   |||||||||*|||||*|||||||| targets:103   CCUCCAAUUCCAUGUGCACCAAAC   126 Target Full Sequence	2.5	Sequence 1122 from Patent EP2074227	NA	coding protein	psRNATarget