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BaseInfo

ncRNA ID novel_zma_miR12394
Species Zea mays
Class miRNA
Genome position Chr8:95381486-95381567 [-]
Reference genome RefGen_v4
Source SRR5105961
Length 21
Mature sequence(if miRNA) 62 - GAGGGGAUUGGAGAGGCUAAA - 82
Stem-loop(if miRNA) ---GA    A      -A           C   UCA      A
     GGGG UUGGAG  GGCUAAAAUCC CUU   AAUUCA U
     |||| ||||||  ||||||||||| |||   ||||||
     UUCC GGCCUU  CCGAUUUUAGG GAA   UUAAGU U
GCUUG    -      CC           C   -CG      U
Stem-loop sequence GAGGGGAUUGGAGAGGCUAAAAUCCCCUUUCAAAUUCAAUUUUGAAUUGCAAGCGGAUUUUAGCCCCUUCCGGCCUUGUUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY104284.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  ||||||||||||=||||||||
targets:1002   UUUAGCCUCUCCGAUCCCCUC   1022

1.5 Zea mays PCO103339 mRNA sequence NA coding protein psRNATarget
BT017648.1
ncRNA:21   AAAU-CGGAGAGGUUAGGGGAG   1
  ||||-|||||||||||||||||
targets:164   UUUAAGCCUCUCCAAUCCCCUC   185

2.0 Zea mays clone EL01N0439D04.c mRNA sequence NA coding protein psRNATarget
XM_020539411.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*|||||||||||||
targets:3498   UUUAGCCCCUCCAAUCCCCUC   3518

1.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020539397.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*|||||||||||||
targets:3533   UUUAGCCCCUCCAAUCCCCUC   3553

1.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA NA coding protein psRNATarget
JB163850.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*|||||||=|||||
targets:72   UUUAGCCCCUCCAAUUCCCUC   92

2.5 Sequence 1514 from Patent EP2559767 NA coding protein psRNATarget
LQ235519.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*|||||||=|||||
targets:72   UUUAGCCCCUCCAAUUCCCUC   92

2.5 Sequence 1514 from Patent EP2985353 NA coding protein psRNATarget
HI403389.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*|||||||=|||||
targets:72   UUUAGCCCCUCCAAUUCCCUC   92

2.5 Sequence 1514 from Patent EP2074227 NA coding protein psRNATarget
LQ237950.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*|||=|||||||||
targets:200   UUUAGCCCCUCUAAUCCCCUC   220

2.5 Sequence 3945 from Patent EP2985353 NA coding protein psRNATarget
JB166281.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*|||=|||||||||
targets:200   UUUAGCCCCUCUAAUCCCCUC   220

2.5 Sequence 3945 from Patent EP2559767 NA coding protein psRNATarget
HI405820.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*|||=|||||||||
targets:200   UUUAGCCCCUCUAAUCCCCUC   220

2.5 Sequence 3945 from Patent EP2074227 NA coding protein psRNATarget
XM_008654495.2
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||||*||=||||||||||
targets:1111   UUUAGCCCCUUCAAUCCCCUC   1131

2.5 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget
AY108273.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  *||||||*|||||||||||||
targets:330   CUUAGCCCCUCCAAUCCCCUC   350

1.0 Zea mays PCO108913 mRNA sequence NA coding protein psRNATarget
BT065170.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  ||||*||*|||||||||||||
targets:682   UUUAUCCCCUCCAAUCCCCUC   702

2.0 Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds NA coding protein psRNATarget
XM_008667867.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  ||||*||*|||||||||||||
targets:1029   UUUAACCCCUCCAAUCCCCUC   1049

2.0 PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA NA coding protein psRNATarget
XM_008670893.2
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  ||||*||*|||||||||||||
targets:1562   UUUAUCCCCUCCAAUCCCCUC   1582

2.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008670890.2
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  ||||*||*|||||||||||||
targets:1582   UUUAUCCCCUCCAAUCCCCUC   1602

2.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670892.2
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  ||||*||*|||||||||||||
targets:1606   UUUAUCCCCUCCAAUCCCCUC   1626

2.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008670891.2
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  ||||*||*|||||||||||||
targets:1639   UUUAUCCCCUCCAAUCCCCUC   1659

2.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA NA coding protein psRNATarget
EU943186.1
ncRNA:21   AAAUCGGAGAGGUUAGGGGAG   1
  |||||*||||||||||||*||
targets:1142   UUUAGGCUCUCCAAUCCCAUC   1162

2.5 Zea mays clone 1582065 mRNA sequence NA coding protein psRNATarget
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