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BaseInfo

ncRNA ID	novel_zma_miR12393
Species	Zea mays
Class	miRNA
Genome position	Chr1:204777588-204777671 [+]
Reference genome	RefGen_v4
Source	SRR5105961
Length	21
Mature sequence(if miRNA)	1 - GGGAUUGAAGGAGCUAAAAUC - 21
Stem-loop(if miRNA)	--G          AG        CU   C        UU  A    GGAUUGAAGG  CUAAAAUC  UUU UUAUUUAA  UU A    ||||||||||  ||||||||  ||| ||||||||  ||    CCUAACUUCC  GAUUUUAG  GAA AAUAAAUU  AA A ACA          CG        UU   U        UU  U
Stem-loop sequence	GGGAUUGAAGGAGCUAAAAUCCUUUUCUUAUUUAAUUUUAAAUAAUUUUAAAUAAUAAGUUGAUUUUAGGCCCUUCAAUCCACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1108   GAUUUUAGCCCCUUCAAUCCC   1128 Target Full Sequence	1.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1834   GAUUUUAGCCCCUUCAAUCCC   1854 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1712   GAUUUUAGCCCCUUCAAUCCC   1732 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1666   GAUUUUAGCCCCUUCAAUCCC   1686 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001154995.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   ||||||||||||||*|||||| targets:1620   GAUUUUAGCUCCUUAAAUCCC   1640 Target Full Sequence	1.5	Zea mays Saccharopine dehydrogenase (IDP363), mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1646   GAUUUUAGCCCCUUCAAUCCC   1666 Target Full Sequence	1.5	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1613   GAUUUUAGCCCCUUCAAUCCC   1633 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU959497.1	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   ||||||||||||||*|||||| targets:1589   GAUUUUAGCUCCUUAAAUCCC   1609 Target Full Sequence	1.5	Zea mays clone 218350 saccharopine dehydrogenase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1520   GAUUUUAGCCCCUUCAAUCCC   1540 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1573   GAUUUUAGCCCCUUCAAUCCC   1593 Target Full Sequence	1.5	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
EU974541.1	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   |||||||||*||||||||||| targets:1474   GAUUUUAGCCCCUUCAAUCCC   1494 Target Full Sequence	1.5	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   CUAAAAUCGAGGAAGUUAGGG   1   ||||*|||||||*|||||||| targets:1667   GAUUCUAGCUCCCUCAAUCCC   1687 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget