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BaseInfo

ncRNA ID novel_zma_miR12370
Species Zea mays
Class miRNA
Genome position Chr7:96638752-96638832 [-]
Reference genome RefGen_v4
Source SRR5105961
Length 24
Mature sequence(if miRNA) 58 - AUUACCGAGAGCAGGACUUUGCCG - 81
Stem-loop(if miRNA) --       A   - A  -A             --   A  CG
  AUUACCG GAG C GG  CUUUGCCGAGUGC  GGC CU  A
  ||||||| ||| | ||  |||||||||||||  ||| ||
  UGAUGGC CUU G CC  GAAACGGCUCACG  CCG GA  U
AG       -   A G  CG             AG   C  AA
Stem-loop sequence AUUACCGAGAGCAGGACUUUGCCGAGUGCGGCACUCGAUAAAGCGCCGAGCACUCGGCAAAGGCCCGGAUUCCGGUAGUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ241984.1
ncRNA:24   GCCGUUUCAGGACGAGAGCCAUUA   1
  ||||||||||||||||||*||||*
targets:17   CGGCAAAGUCCUGCUCUCAGUAAC   40

2.5 Sequence 7979 from Patent EP2985353 NA coding protein psRNATarget
HI409854.1
ncRNA:24   GCCGUUUCAGGACGAGAGCCAUUA   1
  ||||||||||||||||||*||||*
targets:17   CGGCAAAGUCCUGCUCUCAGUAAC   40

2.5 Sequence 7979 from Patent EP2074227 NA coding protein psRNATarget
JB170315.1
ncRNA:24   GCCGUUUCAGGACGAGAGCCAUUA   1
  ||||||||||||||||||*||||*
targets:17   CGGCAAAGUCCUGCUCUCAGUAAC   40

2.5 Sequence 7979 from Patent EP2559767 NA coding protein psRNATarget
XM_008658185.2
ncRNA:24   GCCGUUUCAGGACGAGAGCCAUUA   1
  ||||||||||||||*||||||||*
targets:1647   CGGCAAAGUCCUGCGCUCGGUAAA   1670

2.5 PREDICTED: Zea mays putative F-box/LRR-repeat protein At3g58880 (LOC103635804), mRNA NA coding protein psRNATarget