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BaseInfo

ncRNA ID	novel_zma_miR12369
Species	Zea mays
Class	miRNA
Genome position	Chr1:34840684-34840840 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	1 - UCACAUCAAACGUUUGACUUUCAA - 24
Stem-loop(if miRNA)	--       A  C      -     AAGUA  A    G    A   ACCCAACCAACUAUACU     CGUCUCACUUUUUA   UCACAUC AA GUUUGA CUUUC     GG GUAU AAAU UAG                 AGAUU              A   ||||||| || |||||| |||||     || |||| |||| |||                 |||||              U   AGUGUAG UU CAAACU GGAGG     CC CAUA UUUA AUC                 UUGAU              C AU       C  A      U     -CAAG  C    A    C   ------AGCUUAAUAUU     UAAAGAGUCGGCUU
Stem-loop sequence	UCACAUCAAACGUUUGACUUUCAAGUAGGAGUAUGAAAUAUAGACCCAACCAACUAUACUAGAUUCGUCUCACUUUUUAAUCUUCGGCUGAGAAAUUAGUUUUAUAAUUCGACUACAUUUAAUACCCCGAACGGAGGUUCAAACAUUCGAUGUGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ056664.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:84   UUGAAAGUCAAACGCUUGAUGUGA   107 Target Full Sequence	1.5	TSA: Zea mays contig57786, mRNA sequence	NA	coding protein	psRNATarget
HI403390.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1515 from Patent EP2074227	NA	coding protein	psRNATarget
HI403388.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1513 from Patent EP2074227	NA	coding protein	psRNATarget
JB163849.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1513 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235518.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1513 from Patent EP2985353	NA	coding protein	psRNATarget
HI403332.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1457 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235520.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1515 from Patent EP2985353	NA	coding protein	psRNATarget
JB163793.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1457 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235462.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1457 from Patent EP2985353	NA	coding protein	psRNATarget
JB163851.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:147   UUGAAAGUCAAACGCUUGAUGUGA   170 Target Full Sequence	1.5	Sequence 1515 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001152444.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:978   UUGAAAGUCAAACGCUUGAUGUGA   1001 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA	NA	coding protein	psRNATarget
BT054237.2	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:978   UUGAAAGUCAAACGCUUGAUGUGA   1001 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds	NA	coding protein	psRNATarget
EU949360.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:805   UUGAAAGUCAAACGCUUGAUGUGA   828 Target Full Sequence	1.5	Zea mays clone 403134 mRNA sequence	NA	coding protein	psRNATarget
XM_008656975.2	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||||||||||||||*||||||||| targets:799   UUGAAAGUCAAACGCUUGAUGUGA   822 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA	NA	coding protein	psRNATarget
XM_020544947.1	ncRNA:24   AACUUUCAGUUUGCAAACUACACU   1   ||*|||||||||||*||||||||| targets:2884   UUAAAAGUCAAACGCUUGAUGUGA   2907 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA	NA	coding protein	psRNATarget