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BaseInfo

ncRNA ID novel_zma_miR12356
Species Zea mays
Class miRNA
Genome position Chr6:16607345-16607480 [-]
Reference genome RefGen_v4
Source SRR5105961
Length 24
Mature sequence(if miRNA) 1 - AACGAGAUUAACCGAACAAGGCCU - 24
Stem-loop(if miRNA) ---G             C    AA             AG G        UG  U    AUCUC    AA
    CUUGUUCGGUUAG UCUU  UGCAUGUGGAUUG  U GGAUUGGA  GA UUAA     AAGU  A
    ||||||||||||| ||||  |||||||||||||  | ||||||||  || ||||     ||||  U
    GAACAAGCCAAUU AGAG  AUGUAUACCUAAC  G CCUAACCU  UU AAUU     UUUA  C
UCCG             -    CA             CU G        UU  U    -CUUU    AA
Stem-loop sequence GCUUGUUCGGUUAGCUCUUAAUGCAUGUGGAUUGAGUGGGAUUGGAUGGAUUUAAAUCUCAAGUAAAUCAAAUUUUUUCUUAAUUUUUUCCAAUCCGGUCCAAUCCAUAUGUAACGAGAUUAACCGAACAAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ064093.1
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  |||||||||||||||||||*||||
targets:100   AGGCCUUGUUCGGUUAAUCCCGUU   123

1.5 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
BT086633.1
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  |||||||||||||||||||*||||
targets:367   AGGCCUUGUUCGGUUAAUCCCGUU   390

1.5 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
BT063416.1
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  |||||||||||||||||||*||||
targets:1992   AGGCCUUGUUCGGUUAAUCCCGUU   2015

1.5 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  |||||||||||||||||||*||||
targets:2064   AGGCCUUGUUCGGUUAAUCCCGUU   2087

1.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  |||||||||||||||||||*||||
targets:2065   AGGCCUUGUUCGGUUAAUCCCGUU   2088

1.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  |||||||||||||||||||*||||
targets:2193   AGGCCUUGUUCGGUUAAUCCCGUU   2216

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  |||||||||||||||||||*||||
targets:2200   AGGCCUUGUUCGGUUAAUCCCGUU   2223

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  |||||||||||||||||||*||||
targets:2260   AGGCCUUGUUCGGUUAAUCCCGUU   2283

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008671671.2
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  ||*||||||||||||||||*||||
targets:1518   AGACCUUGUUCGGUUAAUCCCGUU   1541

1.5 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008671669.2
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  ||*||||||||||||||||*||||
targets:1542   AGACCUUGUUCGGUUAAUCCCGUU   1565

1.5 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008671670.2
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  ||*||||||||||||||||*||||
targets:1589   AGACCUUGUUCGGUUAAUCCCGUU   1612

1.5 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008671674.2
ncRNA:24   UCCGGAACAAGCCAAUUAGAGCAA   1
  ||*||||||||||||||||*||||
targets:1674   AGACCUUGUUCGGUUAAUCCCGUU   1697

1.5 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X5, mRNA NA coding protein psRNATarget
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