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BaseInfo

ncRNA ID	novel_zma_miR12348
Species	Zea mays
Class	miRNA
Genome position	Chr6:120829600-120829733 [-]
Reference genome	RefGen_v4
Source	SRR5105961
Length	24
Mature sequence(if miRNA)	1 - ACACUCGGCAAAGAAACUCUUCGC - 24
Stem-loop(if miRNA)	--A     -C               G     G                 -CC             AAA    AAGAG  UCUUUGCCGAGUGUU UAUUU UGACACUCGGCAAAGAG   CUUUGCCGAGUGU   A    |||||  ||||||||||||||| ||||| |||||||||||||||||   |||||||||||||    UUCUC  AGAAACGGCUCACAA AUAAA ACUGUGAGCCGUUUCUC   GAAACGGCUCACA   A CGC     AA               A     A                 AAA             GAA
Stem-loop sequence	AAAGAGCUCUUUGCCGAGUGUUGUAUUUGUGACACUCGGCAAAGAGCCCUUUGCCGAGUGUAAAAAAAGACACUCGGCAAAGAAACUCUUUGCCGAGUGUCAAAAAUAAAACACUCGGCAAAGAAACUCUUCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:24   CGCUUCUCAAAGAAACGGCUCACA   1   ||*||*||||||||||=||||||| targets:78   GCAAAAAGUUUCUUUGUCGAGUGU   101 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   CGCUUCUCAAAGAAACGGCUCACA   1   ||*||*||||||||||=||||||| targets:78   GCAAAAAGUUUCUUUGUCGAGUGU   101 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CGCUUCUCAAAGAAACGGCUCACA   1   ||*||*||||||||||=||||||| targets:2097   GCAAAAAGUUUCUUUGUCGAGUGU   2120 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CGCUUCUCAAAGAAACGGCUCACA   1   ||*||*||||||||||=||||||| targets:2097   GCAAAAAGUUUCUUUGUCGAGUGU   2120 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGCUUCUCAAAGAAACGGCUCACA   1   ||*||||***|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGU   42 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGCUUCUCAAAGAAACGGCUCACA   1   ||*||||***|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGU   42 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGCUUCUCAAAGAAACGGCUCACA   1   ||*||||***|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGU   42 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   CGCU-UCUCAAAGAAACGGCUCACA   1   *||=-|*||*||||||||||||||| targets:173   CCGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	2.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   CGCU-UCUCAAAGAAACGGCUCACA   1   *||=-|*||*||||||||||||||| targets:173   CCGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	2.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   CGCU-UCUCAAAGAAACGGCUCACA   1   *||=-|*||*||||||||||||||| targets:173   CCGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	2.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   CGCU-UCUCAAAGAAACGGCUCACA   1   *||=-|*||*||||||||||||||| targets:36   CCGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	2.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   CGCU-UCUCAAAGAAACGGCUCACA   1   *||=-|*||*||||||||||||||| targets:36   CCGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	2.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   CGCU-UCUCAAAGAAACGGCUCACA   1   *||=-|*||*||||||||||||||| targets:36   CCGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	2.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
EU971646.1	ncRNA:24   CGCUUCUCAAAGAAACGGCUCACA   1   **|||**||*|||||||||||||| targets:820   CGGAAUCGUGUCUUUGCCGAGUGU   843 Target Full Sequence	3.0	Zea mays clone 368614 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI408565.1	ncRNA:21   UUCUCAAAGAAACGGCUCACA   1   ***||*||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	2.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:21   UUCUCAAAGAAACGGCUCACA   1   ***||*||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	2.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:21   UUCUCAAAGAAACGGCUCACA   1   ***||*||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	2.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget