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BaseInfo

ncRNA ID	novel_zma_miR12339
Species	Zea mays
Class	miRNA
Genome position	Chr6:143983994-143984211 [+]
Reference genome	RefGen_v4
Source	SRR5105961
Length	22
Mature sequence(if miRNA)	197 - ACCGGCUCACCAUCGUCUGACC - 218
Stem-loop(if miRNA)	--C         U              A                         A               G   G                    G  G  G       U    CAGACGAUG UGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUU AAAGCCGCCCCGGCU CAU UGUGUGCUUCUCUUCUCUUA GU GG UGCUAAG G    ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| || || |||||||    GUCUGCUAC ACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAA UUUCGGCGGGGCCGA GUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A CCA         C              G                         A               A   G                    A  G  G       U
Stem-loop sequence	CCAGACGAUGUUGAGCCGGUGUACUAUGUCCGGAUGUGUGGUCACAAAAUUAAAAGCCGCCCCGGCUGCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGCCGGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAGAGUACACCGGCUCACCAUCGUCUGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538582.1	ncRNA:22   CCAGUCUGCUACCACUCGGCCA   1   *|*||||||||||||||||||| targets:3204   AGCCAGACGAUGGUGAGCCGGU   3225 Target Full Sequence	0.0	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538581.1	ncRNA:22   CCAGUCUGCUACCACUCGGCCA   1   *|*||||||||||||||||||| targets:3342   AGCCAGACGAUGGUGAGCCGGU   3363 Target Full Sequence	0.0	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU940887.1	ncRNA:22   CCAGUCUGCUACCACUCGGCCA   1   *|**||=||||||||||||||* targets:1803   AGAAAGGCGAUGGUGAGCCGGC   1824 Target Full Sequence	3.0	Zea mays clone 1166254 mRNA sequence	NA	coding protein	psRNATarget
EU967579.1	ncRNA:22   CCAGUCUGCUACCACUCGGCCA   1   ||-|*||||||||||||||*|| targets:1396   GG-CUGACGAUGGUGAGCCUGU   1416 Target Full Sequence	2.5	Zea mays clone 304590 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150870.1	ncRNA:22   CCAGUCUGCUACCACUCGGCCA   1   ||-|*||||||||||||||*|| targets:1396   GG-CUGACGAUGGUGAGCCUGU   1416 Target Full Sequence	2.5	Zea mays uncharacterized LOC100277245 (LOC100277245), mRNA	NA	coding protein	psRNATarget
XM_020549631.1	ncRNA:22   CCAGUCUGCUACCACUCGGCCA   1   ||-|*||||||||||||||*|| targets:3762   GG-CUGACGAUGGUGAGCCUGU   3782 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100277245 (LOC100277245), transcript variant X1, mRNA	NA	coding protein	psRNATarget