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BaseInfo

ncRNA ID	novel_zma_miR12310
Species	Zea mays
Class	miRNA
Genome position	Chr4:69334070-69334128 [+]
Reference genome	RefGen_v4
Source	SRR5105961
Length	24
Mature sequence(if miRNA)	1 - AGCACUCGACAAAGAACCUGACAA - 24
Stem-loop(if miRNA)	--                CC  A  AA     AGCACUCGACAAAGAA  UG CA  GGG   ||||||||||||||||  || ||  ||A   UCGUGAGCUGUUUCUU  GC GU  CCC GG                AA  A  CG
Stem-loop sequence	AGCACUCGACAAAGAACCUGACAAAGGGACCCGCUGACGAAUUCUUUGUCGAGUGCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170246.1	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *|||*||||||||||*|||||||| targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97 Target Full Sequence	1.5	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *|||*||||||||||*|||||||| targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97 Target Full Sequence	1.5	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *|||*||||||||||*|||||||| targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97 Target Full Sequence	1.5	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *****||*||||||||||||||=| targets:79   CAAAAAGUUUCUUUGUCGAGUGUU   102 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *****||*||||||||||||||=| targets:79   CAAAAAGUUUCUUUGUCGAGUGUU   102 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *****||*||||||||||||||=| targets:2098   CAAAAAGUUUCUUUGUCGAGUGUU   2121 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *****||*||||||||||||||=| targets:2098   CAAAAAGUUUCUUUGUCGAGUGUU   2121 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *****|*|||||||||||||||=| targets:427   CAAAAAAGUUCUUUGUCGAGUGUU   450 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   AACAGUCCAAGAAACAGCUCACGA   1   *****|*|||||||||||||||=| targets:679   CAAAAAAGUUCUUUGUCGAGUGUU   702 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:24   AACA---GUCCAAGAAACAGCUCACGA   1   |||*---==|*|||||||||||||||* targets:3917   UUGGAGAUGGCUUCUUUGUCGAGUGCC   3943 Target Full Sequence	3.0	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget