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BaseInfo

ncRNA ID novel_zma_miR12307
Species Zea mays
Class miRNA
Genome position Chr4:16374792-16374954 [-]
Reference genome RefGen_v4
Source SRR5105961
Length 24
Mature sequence(if miRNA) 140 - AGGAGGCCGUAGGAAGUUAGCUAC - 163
Stem-loop(if miRNA) --   A                 UACCCAU            GU   AG AG   A            U   --   C ACA
  AGG GGCCGUAGGAAGUUAGC       GCUAACUUCCUA  GUC  C  UAG AAGUUAGCUUUU GUU  UGA C   A
  ||| |||||||||||||||||       ||||||||||||  |||  |  ||| |||||||||||| |||  ||| |   C
  UCC UCGGCAUCCUUCAAUCG       CGAUUGAAGGAU  CGG  G  AUC UUCAAUCGAAAA CAA  ACU G   C
UC   G                 UACCAGU            AC   AG AG   C            U   CG   A ACG
Stem-loop sequence AGGAGGCCGUAGGAAGUUAGCUACCCAUGCUAACUUCCUAGUGUCAGCAGUAGAAAGUUAGCUUUUUGUUUGACCACAACCGCAGAUCAGCAACUAAAAGCUAACUUCCUAGAGGAGGCCAUAGGAAGUUAGCUGACCAUGCUAACUUCCUACGGCUGCCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   CAUCGAUUGAAGGAUGCCGGAGGA   1
  |**||||||||=||||||||||||
targets:1127   GCCGCUAACUUUCUACGGCCUCCU   1150

1.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget