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BaseInfo

ncRNA ID novel_zma_miR12306
Species Zea mays
Class miRNA
Genome position Chr4:31884584-31884631 [-]
Reference genome RefGen_v4
Source SRR5105961
Length 24
Mature sequence(if miRNA) 25 - AUGUUUGCGCCCGGGCUUUGGACC - 48
Stem-loop(if miRNA) --   U UG        C     A
  AUG U  CGCCCGGG UUUGG C
  ||| |  |||||||| ||||| C
  UAC A  GUGGGCCC AAAUC C
AC   - GU        A     C
Stem-loop sequence AUGUUUGCGCCCGGGCUUUGGACCCCCUAAAACCCGGGUGUGACAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU940868.1
ncRNA:24   CCAGGUUUCGGGCCCGCGUUUGUA   1
  ||||||||*|||||||||*|||||
targets:628   GGUCCAAAACCCGGGCGCUAACAU   651

2.5 Zea mays clone 1165273 mRNA sequence NA coding protein psRNATarget
EZ108461.1
ncRNA:24   CCAGGUUUCGGGCCCGCGUUUGUA   1
  |||=||||*|||||||||*|||||
targets:9   GGUUCAAAACCCGGGCGCUAACAU   32

2.5 TSA: Zea mays contig44120, mRNA sequence NA coding protein psRNATarget