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BaseInfo

ncRNA ID novel_zma_miR12298
Species Zea mays
Class miRNA
Genome position Chr4:52310089-52310245 [-]
Reference genome RefGen_v4
Source SRR5105961
Length 24
Mature sequence(if miRNA) 134 - AAACUAUCUGAUCCAUUAGAUCGU - 157
Stem-loop(if miRNA) --                  G  CG     C    -----G  -   CACAUUCAACACUUAAACCUUUCCACCACCAGCU
  AAACUAUCUGAUCCAUUA AU  UGAUC AACC      UA AGU                                  C
  |||||||||||||||||| ||  ||||| ||||      || |||                                  A
  UUUGGUAGACUAGGUAAU UA  GCUAG UUGG      UG UGG                                  A
CG                  A  AU     A    UGUCUA  U   UACCAAACAAUCCCCCAAAAAAAAUAUUUCUAAU
Stem-loop sequence AAACUAUCUGAUCCAUUAGAUCGUGAUCCAACCGUAAGUCACAUUCAACACUUAAACCUUUCCACCACCAGCUCAAUAAUCUUUAUAAAAAAAACCCCCUAACAAACCAUGGUUGUAUCUGUGGUUAGAUCGUAAUAUAAUGGAUCAGAUGGUUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235525.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  |||||||||||||||||||=||||
targets:164   ACGAUCUAAUGGAUCAGAUGGUUU   187

1.5 Sequence 1520 from Patent EP2985353 NA coding protein psRNATarget
JB163856.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  |||||||||||||||||||=||||
targets:164   ACGAUCUAAUGGAUCAGAUGGUUU   187

1.5 Sequence 1520 from Patent EP2559767 NA coding protein psRNATarget
HI403395.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  |||||||||||||||||||=||||
targets:164   ACGAUCUAAUGGAUCAGAUGGUUU   187

1.5 Sequence 1520 from Patent EP2074227 NA coding protein psRNATarget
XM_020538741.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  |||||||||||||||||||=||||
targets:965   ACGAUCUAAUGGAUCAGAUGGUUU   988

1.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648194.2
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  |||||||||||||||||||=||||
targets:965   ACGAUCUAAUGGAUCAGAUGGUUU   988

1.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA NA coding protein psRNATarget
HI403098.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  ||*||||||||||||||||=||||
targets:140   ACAAUCUAAUGGAUCAGAUGGUUU   163

1.5 Sequence 1223 from Patent EP2074227 NA coding protein psRNATarget
JB163559.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  ||*||||||||||||||||=||||
targets:140   ACAAUCUAAUGGAUCAGAUGGUUU   163

1.5 Sequence 1223 from Patent EP2559767 NA coding protein psRNATarget
LQ235228.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  ||*||||||||||||||||=||||
targets:140   ACAAUCUAAUGGAUCAGAUGGUUU   163

1.5 Sequence 1223 from Patent EP2985353 NA coding protein psRNATarget
XM_008679933.2
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  |||||*|||||||||||||=||||
targets:1790   ACGAUAUAAUGGAUCAGAUGGUUU   1813

2.5 PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008664646.2
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||||||||||||||||=||||
targets:365   UCGUAAUCUAAUGGAUCAGAUGGUUU   390

1.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008664645.2
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||||||||||||||||=||||
targets:365   UCGUAAUCUAAUGGAUCAGAUGGUUU   390

1.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008664644.2
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||||||||||||||||=||||
targets:365   UCGUAAUCUAAUGGAUCAGAUGGUUU   390

1.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA NA coding protein psRNATarget
LQ235229.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||=|||||||||||||=||||
targets:168   UCGUAAUUUAAUGGAUCAGAUGGUUU   193

2.5 Sequence 1224 from Patent EP2985353 NA coding protein psRNATarget
HI403099.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||=|||||||||||||=||||
targets:168   UCGUAAUUUAAUGGAUCAGAUGGUUU   193

2.5 Sequence 1224 from Patent EP2074227 NA coding protein psRNATarget
JB163560.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||=|||||||||||||=||||
targets:168   UCGUAAUUUAAUGGAUCAGAUGGUUU   193

2.5 Sequence 1224 from Patent EP2559767 NA coding protein psRNATarget
JB163917.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--|||||||*|||||||||||||
targets:163   UCGUAAUCUAAUAGAUCAGAUAGUUU   188

1.0 Sequence 1581 from Patent EP2559767 NA coding protein psRNATarget
HI403456.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--|||||||*|||||||||||||
targets:163   UCGUAAUCUAAUAGAUCAGAUAGUUU   188

1.0 Sequence 1581 from Patent EP2074227 NA coding protein psRNATarget
LQ235586.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--|||||||*|||||||||||||
targets:163   UCGUAAUCUAAUAGAUCAGAUAGUUU   188

1.0 Sequence 1581 from Patent EP2985353 NA coding protein psRNATarget
LQ235556.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||*|||||||||||||=||||
targets:161   UCGUAAUAUAAUGGAUCAGAUGGUUU   186

2.5 Sequence 1551 from Patent EP2985353 NA coding protein psRNATarget
JB163887.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||*|||||||||||||=||||
targets:161   UCGUAAUAUAAUGGAUCAGAUGGUUU   186

2.5 Sequence 1551 from Patent EP2559767 NA coding protein psRNATarget
HI403426.1
ncRNA:24   UGC--UAGAUUACCUAGUCUAUCAAA   1
  *||--||*|||||||||||||=||||
targets:161   UCGUAAUAUAAUGGAUCAGAUGGUUU   186

2.5 Sequence 1551 from Patent EP2074227 NA coding protein psRNATarget
HI403187.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  *=*|||||*||||||||||=||||
targets:164   UUUAUCUAUUGGAUCAGAUGGUUU   187

2.5 Sequence 1312 from Patent EP2074227 NA coding protein psRNATarget
LQ235317.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  *=*|||||*||||||||||=||||
targets:164   UUUAUCUAUUGGAUCAGAUGGUUU   187

2.5 Sequence 1312 from Patent EP2985353 NA coding protein psRNATarget
JB163648.1
ncRNA:24   UGCUAGAUUACCUAGUCUAUCAAA   1
  *=*|||||*||||||||||=||||
targets:164   UUUAUCUAUUGGAUCAGAUGGUUU   187

2.5 Sequence 1312 from Patent EP2559767 NA coding protein psRNATarget
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