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BaseInfo

ncRNA ID	novel_zma_miR12259
Species	Zea mays
Class	miRNA
Genome position	Chr5:100129023-100129127 [-]
Reference genome	RefGen_v4
Source	SRR5105959
Length	21
Mature sequence(if miRNA)	85 - CGGACGGUUCGCGGCCAGGGG - 105
Stem-loop(if miRNA)	--     G     C G  A     -UA   G    GC  A   GUG G    U   G   CGGAC GUUCG G CC GGGGC   GAC GUCC  GG CUG   C AGGC AGG U   ||||| ||||| | || |||||   ||| ||||  || |||   | |||| |||   GCCUG CAGGC C GG UCCCG   CUG CAGG  CC GGC   G UCCG UCC U GC     G     - G  A     CGC   G    --  -   --A -    -   U
Stem-loop sequence	CGGACGGUUCGCGGCCAGGGGCUAGACGGUCCGCGGACUGGUGCGAGGCUAGGGUUUCCUGCCUGACGGCCGGACGGUCCGCGCCCUAGGGCCGGACGGUCCGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ073491.1	ncRNA:21   GGGGACCGGCGCUUGGCAGGC   1   ||||*|||||||=|||||||| targets:89   CCCCAGGCCGCGGACCGUCCG   109 Target Full Sequence	2.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget
BT039435.1	ncRNA:21   GGGGACCGGCGCUUGGCAGGC   1   |||||*||||||=|||||||| targets:293   CCCCUAGCCGCGGACCGUCCG   313 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:21   GGGGACCGGCGCUUGGCAGGC   1   |*||*|||||||=|||||||| targets:1241   CACCAGGCCGCGGACCGUCCG   1261 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:21   GGGGACCGGCGCUUGGCAGGC   1   |*||*|||||||=|||||||| targets:1241   CACCAGGCCGCGGACCGUCCG   1261 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:21   GGGGACCGGCGCUUGGCAGGC   1   |*||*|||||||=|||||||| targets:2684   CACCAGGCCGCGGACCGUCCG   2704 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:21   GGGGACCGGCGCUUGGCAGGC   1   |*||*|||||||=|||||||| targets:2757   CACCAGGCCGCGGACCGUCCG   2777 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
NM_001148131.1	ncRNA:21   GGGGACCGGCGCUUGGCAGGC   1   *=||||*||*||||||||||| targets:12   GUCCUGUCCUCGAACCGUCCG   32 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273721 (LOC100273721), mRNA	NA	coding protein	psRNATarget
BT041701.1	ncRNA:21   GGGGACCGGCGCUUGGCAGGC   1   *=||||*||*||||||||||| targets:12   GUCCUGUCCUCGAACCGUCCG   32 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0034H03 mRNA, complete cds	NA	coding protein	psRNATarget