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BaseInfo

ncRNA ID	novel_zma_miR12258
Species	Zea mays
Class	miRNA
Genome position	Chr5:115459316-115459360 [-]
Reference genome	RefGen_v4
Source	SRR5105959
Length	20
Mature sequence(if miRNA)	26 - CCCUUAUGUCCGACGGCUUU - 45
Stem-loop(if miRNA)	----CC              CUU       CUUAUGUCCGACGG   U       ||||||||||||||   A       GAAUACAGGCUGCC   A CCGAGU              AAA
Stem-loop sequence	CCCUUAUGUCCGACGGCUUUAAAAACCGUCGGACAUAAGUGAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084287.2	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   |||||||||||||||||||* targets:618   AAAGCCGUCGGACAUAAGGA   637 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0098I11 mRNA, complete cds	NA	coding protein	psRNATarget
BT084287.2	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   *|*||||||||||||||||* targets:673   UAUGCCGUCGGACAUAAGGC   692 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0098I11 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235057.1	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   ||||||||||||||||||** targets:9   AAAGCCGUCGGACAUAAGCC   28 Target Full Sequence	2.5	Sequence 1052 from Patent EP2985353	NA	coding protein	psRNATarget
HI402927.1	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   ||||||||||||||||||** targets:9   AAAGCCGUCGGACAUAAGCC   28 Target Full Sequence	2.5	Sequence 1052 from Patent EP2074227	NA	coding protein	psRNATarget
JB163388.1	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   ||||||||||||||||||** targets:9   AAAGCCGUCGGACAUAAGCC   28 Target Full Sequence	2.5	Sequence 1052 from Patent EP2559767	NA	coding protein	psRNATarget
HI406959.1	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   *|||||||||||||||||** targets:38   UAAGCCGUCGGACAUAAGCU   57 Target Full Sequence	2.5	Sequence 5084 from Patent EP2074227	NA	coding protein	psRNATarget
JB167420.1	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   *|||||||||||||||||** targets:38   UAAGCCGUCGGACAUAAGCU   57 Target Full Sequence	2.5	Sequence 5084 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239089.1	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   *|||||||||||||||||** targets:38   UAAGCCGUCGGACAUAAGCU   57 Target Full Sequence	2.5	Sequence 5084 from Patent EP2985353	NA	coding protein	psRNATarget
BT040943.1	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   |||*|||||||||||||||* targets:851   AAAACCGUCGGACAUAAGGU   870 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0154H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT040692.1	ncRNA:20   UUUCGGCAGCCUGUAUUCCC   1   |||*|||||||||||||||* targets:857   AAAACCGUCGGACAUAAGGU   876 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0118E11 mRNA, complete cds	NA	coding protein	psRNATarget