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BaseInfo

ncRNA ID	novel_zma_miR12230
Species	Zea mays
Class	miRNA
Genome position	Chr4:183031269-183031313 [-]
Reference genome	RefGen_v4
Source	SRR5105959
Length	21
Mature sequence(if miRNA)	1 - AACUAGGGGUGGUAAUGGGCU - 21
Stem-loop(if miRNA)	--         CU       CAU   CCUGUUACU  UUUUUAG   C   |||||||||  |||||||   GGGUAAUGG  GGGGAUC   A UC         -U       AAC
Stem-loop sequence	CCUGUUACUCUUUUUUAGCAUCACAACUAGGGGUGGUAAUGGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ078809.1	ncRNA:21   UCGGGUAAUGGUGGGGAUCAA   1   |||==|||||||||||||||| targets:35   AGCUUAUUACCACCCCUAGUU   55 Target Full Sequence	2.0	TSA: Zea mays contig14448, mRNA sequence	NA	coding protein	psRNATarget
EZ078809.1	ncRNA:21   UCGGGUAAUGGUGGGGAUCAA   1   |||*=|||||||||||||||| targets:69   AGCAUAUUACCACCCCUAGUU   89 Target Full Sequence	2.0	TSA: Zea mays contig14448, mRNA sequence	NA	coding protein	psRNATarget
NM_001175267.1	ncRNA:21   UCGGGUAAUGGUGGGGAUCAA   1   =*=|||||||||||||||||| targets:1344   GAUCCAUUACCACCCCUAGUU   1364 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382531 (LOC100382531), mRNA	NA	coding protein	psRNATarget
BT064673.1	ncRNA:21   UCGGGUAAUGGUGGGGAUCAA   1   =*=|||||||||||||||||| targets:1344   GAUCCAUUACCACCCCUAGUU   1364 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0010F21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349988.1	ncRNA:21   UCGGGUAAUGGUGGGGAUCAA   1   =*=|||||||||||=|||||| targets:2223   GAUCCAUUACCACCUCUAGUU   2243 Target Full Sequence	2.5	Zea mays putative MATE efflux family protein (LOC100278502), mRNA	NA	coding protein	psRNATarget
XM_020545766.1	ncRNA:21   UCGGGUAAUGGUGGGGAUCAA   1   =*=|||||||||||||||||* targets:3573   GAUCCAUUACCACCCCUAGUC   3593 Target Full Sequence	2.0	PREDICTED: Zea mays probable calcium-transporting ATPase 4, plasma membrane-type (LOC103640660), mRNA	NA	coding protein	psRNATarget
EU961023.1	ncRNA:21   UCGGGUAAUGGUGGGGAUCAA   1   =*=||||||||||||||||*| targets:1283   GAUCCAUUACCACCCCUAGAU   1303 Target Full Sequence	2.5	Zea mays clone 230521 DNA binding like mRNA, complete cds	NA	coding protein	psRNATarget