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BaseInfo

ncRNA ID	novel_zma_miR12222
Species	Zea mays
Class	miRNA
Genome position	Chr4:244758435-244758557 [+]
Reference genome	RefGen_v4
Source	SRR5105959
Length	21
Mature sequence(if miRNA)	103 - GAAUGACUUAUAUUUUGGGAC - 123
Stem-loop(if miRNA)	--                            U             --UU   UUCAUUGUAUA   CCUAAAAUAUAAGUCAUUCCAAGAUUUU GGAGAGUCGAAGU    UAC           A   |||||||||||||||||||||||||||| |||||||||||||    |||           A   GGGUUUUAUAUUCAGUAAGGUUCUAAGA CCUCUCAGUUUCA    AGU           A CA                            C             CAAA   UCAAACUGGUU
Stem-loop sequence	CCUAAAAUAUAAGUCAUUCCAAGAUUUUUGGAGAGUCGAAGUUUUACUUCAUUGUAUAAAAUUGGUCAAACUUGAAAACACUUUGACUCUCCCAGAAUCUUGGAAUGACUUAUAUUUUGGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547740.1	ncRNA:21   CAGGGUUUUAUAUUCAGUAAG   1   ||||=*||||||||||||||* targets:1189   GUCCUCAAAUAUAAGUCAUUA   1209 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100282919 (cl5026_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543906.1	ncRNA:21   CAGGGUUUUAUAUUCAGUAAG   1   **||||=*||||||||||||| targets:1231   UCCCCAGCAUAUAAGUCAUUC   1251 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103638705 (LOC103638705), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543907.1	ncRNA:21   CAGGGUUUUAUAUUCAGUAAG   1   **||||=*||||||||||||| targets:1233   UCCCCAGCAUAUAAGUCAUUC   1253 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103638705 (LOC103638705), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661545.2	ncRNA:21   CAGGGUUUUAUAUUCAGUAAG   1   **||||=*||||||||||||| targets:1201   UCCCCAGCAUAUAAGUCAUUC   1221 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103638705 (LOC103638705), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008661546.2	ncRNA:21   CAGGGUUUUAUAUUCAGUAAG   1   **||||=*||||||||||||| targets:1192   UCCCCAGCAUAUAAGUCAUUC   1212 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103638705 (LOC103638705), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001199610.1	ncRNA:21   CAGGGUUUUAUAUUCAGUAAG   1   **||||||||||||*|||||= targets:1809   CGCCCAAAAUAUAAUUCAUUU   1829 Target Full Sequence	2.5	Zea mays pentatricopeptide repeat protein (LOC100527940), mRNA	NA	coding protein	psRNATarget
HQ534069.1	ncRNA:21   CAGGGUUUUAUAUUCAGUAAG   1   **||||||||||||*|||||= targets:1809   CGCCCAAAAUAUAAUUCAUUU   1829 Target Full Sequence	2.5	Zea mays pentatricopeptide repeat protein mRNA, complete cds	NA	coding protein	psRNATarget