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BaseInfo

ncRNA ID	novel_zma_miR12220
Species	Zea mays
Class	miRNA
Genome position	Chr4:230205748-230205806 [+]
Reference genome	RefGen_v4
Source	SRR5105959
Length	24
Mature sequence(if miRNA)	36 - UAUGACAUGUGGGGCCAGUGGCAC - 59
Stem-loop(if miRNA)	--       A  GA     -AU      UU   GCCACUG GU  CAUAU   GUAUAU  U   ||||||| ||  |||||   ||||||  G   CGGUGAC CG  GUGUA   UAUGUG  U CA       -  GG     CAG      UG
Stem-loop sequence	GCCACUGAGUGACAUAUAUGUAUAUUUUGUGUGUGUAUGACAUGUGGGGCCAGUGGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT040698.1	ncRNA:24   CACGGUGACCGGGGUGUACAGUAU   1   |||||||||||=|||||||||||| targets:651   GUGCCACUGGCUCCACAUGUCAUA   674 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0119B19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147730.1	ncRNA:24   CACGGUGACCGGGGUGUACAGUAU   1   |||||||||||=|||||||||||| targets:651   GUGCCACUGGCUCCACAUGUCAUA   674 Target Full Sequence	1.5	Zea mays Vacuolar protein sorting-associated protein 24 homolog 1 (umc2748), mRNA	NA	coding protein	psRNATarget
XM_008655872.2	ncRNA:24   CACGGUGACCGGGGUGUACAGUAU   1   *||||||||||||||||||||||| targets:1124   AUGCCACUGGCCCCACAUGUCAUA   1147 Target Full Sequence	0.0	PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103634314), mRNA	NA	coding protein	psRNATarget
EU945728.1	ncRNA:24   CACGGUGACCGGGGUGUACAGUAU   1   *|||||||||=||||||||||||| targets:1046   AUGCCACUGGUCCCACAUGUCAUA   1069 Target Full Sequence	1.0	Zea mays clone 283792 mRNA sequence	NA	coding protein	psRNATarget