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BaseInfo

ncRNA ID	novel_zma_miR12193
Species	Zea mays
Class	miRNA
Genome position	Chr1:239351853-239352079 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	204 - AUGAUAUCAUGACACGUAGACAAG - 227
Stem-loop(if miRNA)	--    C                                      U  U    UG   G      GU     -  CA A       G            A     CA      CA   UGUC ACGUGUCAUGAUAUCAUAUGUACAGGCUGUGAUAAAAA UU AGAA  UUU GAGAAA  UGUGA GC  C AUGUGUA AAAUCUAAGAGA CUACG  UGAAAU  U   |||| |||||||||||||||||||||||||||||||||||||| || ||||  ||| ||||||  ||||| ||  | ||||||| |||||||||||| |||||  ||||||   ACAG UGCACAGUACUAUAGUAUACAUGUCCGACACUAUUUUU AA UUUU  AAA CUCUUU  AUACU CG  G UACACAU UUUGGAUUCUCU GGUGU  ACUUUG  A GA    A                                      U  C    UA   G      UG     G  -C A       G            A     -A      AG
Stem-loop sequence	UGUCCACGUGUCAUGAUAUCAUAUGUACAGGCUGUGAUAAAAAUUUUAGAAUGUUUGGAGAAAGUUGUGAGCCACAAUGUGUAGAAAUCUAAGAGAACUACGCAUGAAAUCAUAGAGUUUCAAUGUGGAUCUCUUAGGUUUGUACACAUAGCGCGUCAUAGUUUUCUCGAAAAUUUUUCAAUUUUUUAUCACAGCCUGUACAUAUGAUAUCAUGACACGUAGACAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235350.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget