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BaseInfo

ncRNA ID novel_zma_miR12174
Species Zea mays
Class miRNA
Genome position Chr10:118813639-118813711 [-]
Reference genome RefGen_v4
Source SRR5105959
Length 22
Mature sequence(if miRNA) 1 - UUCCUAAUGCCUCCCAUUCCUA - 22
Stem-loop(if miRNA) --  C      -A   GG        - --U       U
  GG AUGGGA  CAU  AGGAAGGC C   AUGAGGU G
  || ||||||  |||  |||||||| |   |||||||
  CC UACCCU  GUA  UCCUUCUG G   UACUCCA A
AU  U      CC   -A        U UUU       A
Stem-loop sequence GGCAUGGGAACAUGGAGGAAGGCCUAUGAGGUUGAAACCUCAUUUUGUGUCUUCCUAAUGCCUCCCAUUCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943944.1
ncRNA:22   AUCCUUACCCUCCGUAAUCCUU   1
  |||||*|||*||||||||||||
targets:92   UAGGAUUGGUAGGCAUUAGGAA   113

2.5 Zea mays clone 1701522 mRNA sequence NA coding protein psRNATarget
EU955520.1
ncRNA:22   AUCCUUACCCUCCGUAAUCCUU   1
  *||*||*||||||||||||||*
targets:1980   CAGCAACGGGAGGCAUUAGGAU   2001

3.0 Zea mays clone 1535323 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149460.1
ncRNA:22   AUCCUUACCCUCCGUAAUCCUU   1
  *||*||*||||||||||||||*
targets:1980   CAGCAACGGGAGGCAUUAGGAU   2001

3.0 Zea mays hypothetical protein (TIDP3280), mRNA NA coding protein psRNATarget