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BaseInfo

ncRNA ID	novel_zma_miR12169
Species	Zea mays
Class	miRNA
Genome position	Chr2:145396195-145396354 [+]
Reference genome	RefGen_v4
Source	SRR5105959
Length	24
Mature sequence(if miRNA)	1 - UUCUUUGCCGAGUGCCAACGUCUG - 24
Stem-loop(if miRNA)	--               CAA  -                G       A   AAAUAG       AC        A     AGA   UUCUUUGCCGAGUGC   CG UCUGGCGCUCGGCAAA UGUUUUU UAA      UAAAAUA  CUUUGUCG GUGUC   U   |||||||||||||||   || |||||||||||||||| ||||||| |||      |||||||  |||||||| |||||   AAGAAACGGCUCACG   GC AGACCGUGAGCUGUUU AUAAAAA AUU      AUUUUAU  GAAACGGC CACGG   C AC               AGC  U                -       A   ----AA       GU        A     GCG
Stem-loop sequence	UUCUUUGCCGAGUGCCAACGUCUGGCGCUCGGCAAAGUGUUUUUAUAAAAAUAGUAAAAUAACCUUUGUCGAGUGUCAGAUCGCGGGCACACGGCAAAGUGUAUUUUAAAUUAAAAAAAUAUUUGUCGAGUGCCAGAUCGCGAGCACUCGGCAAAGAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406741.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   ==|=|*|||||||||||||||||| targets:114   UGGGCUUUGGCACUCGGCAAAGAA   137 Target Full Sequence	1.0	Sequence 4866 from Patent EP2074227	NA	coding protein	psRNATarget
JB167202.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   ==|=|*|||||||||||||||||| targets:114   UGGGCUUUGGCACUCGGCAAAGAA   137 Target Full Sequence	1.0	Sequence 4866 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238871.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   ==|=|*|||||||||||||||||| targets:114   UGGGCUUUGGCACUCGGCAAAGAA   137 Target Full Sequence	1.0	Sequence 4866 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237992.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |||*|||||||*|||||||||||* targets:24   CAGUCGUUGGCUCUCGGCAAAGAC   47 Target Full Sequence	2.5	Sequence 3987 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237992.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |=******|||||||||||||||| targets:213   CGACAAAAGGCACUCGGCAAAGAA   236 Target Full Sequence	3.0	Sequence 3987 from Patent EP2985353	NA	coding protein	psRNATarget
HI405862.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |||*|||||||*|||||||||||* targets:24   CAGUCGUUGGCUCUCGGCAAAGAC   47 Target Full Sequence	2.5	Sequence 3987 from Patent EP2074227	NA	coding protein	psRNATarget
HI405862.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |=******|||||||||||||||| targets:213   CGACAAAAGGCACUCGGCAAAGAA   236 Target Full Sequence	3.0	Sequence 3987 from Patent EP2074227	NA	coding protein	psRNATarget
JB166323.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |||*|||||||*|||||||||||* targets:24   CAGUCGUUGGCUCUCGGCAAAGAC   47 Target Full Sequence	2.5	Sequence 3987 from Patent EP2559767	NA	coding protein	psRNATarget
JB166323.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |=******|||||||||||||||| targets:213   CGACAAAAGGCACUCGGCAAAGAA   236 Target Full Sequence	3.0	Sequence 3987 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241826.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |||**||||||*|||||||||||* targets:58   CAGCAGUUGGCUCUCGGCAAAGAC   81 Target Full Sequence	2.5	Sequence 7821 from Patent EP2985353	NA	coding protein	psRNATarget
JB170157.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |||**||||||*|||||||||||* targets:58   CAGCAGUUGGCUCUCGGCAAAGAC   81 Target Full Sequence	2.5	Sequence 7821 from Patent EP2559767	NA	coding protein	psRNATarget
HI409696.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   |||**||||||*|||||||||||* targets:58   CAGCAGUUGGCUCUCGGCAAAGAC   81 Target Full Sequence	2.5	Sequence 7821 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239238.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   **|=|**||||||||||||||||| targets:28   GUGGCACUGGCACUCGGCAAAGAA   51 Target Full Sequence	2.0	Sequence 5233 from Patent EP2985353	NA	coding protein	psRNATarget
HI407108.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   **|=|**||||||||||||||||| targets:28   GUGGCACUGGCACUCGGCAAAGAA   51 Target Full Sequence	2.0	Sequence 5233 from Patent EP2074227	NA	coding protein	psRNATarget
JB167569.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   **|=|**||||||||||||||||| targets:28   GUGGCACUGGCACUCGGCAAAGAA   51 Target Full Sequence	2.0	Sequence 5233 from Patent EP2559767	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   ||**|||||||*|||||||||||= targets:1379   CAUCCGUUGGCUCUCGGCAAAGAG   1402 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   **|=|**||||||||||||||||| targets:199   AUGGCUCUGGCACUCGGCAAAGAA   222 Target Full Sequence	2.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   **|=|**||||||||||||||||| targets:199   AUGGCUCUGGCACUCGGCAAAGAA   222 Target Full Sequence	2.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   **|=|**||||||||||||||||| targets:199   AUGGCUCUGGCACUCGGCAAAGAA   222 Target Full Sequence	2.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   ||**|||||||*|||||||||||= targets:1516   CAUCCGUUGGCUCUCGGCAAAGAG   1539 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   ||**|||||||*|||||||||||= targets:1516   CAUCCGUUGGCUCUCGGCAAAGAG   1539 Target Full Sequence	2.5	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
XM_020545852.1	ncRNA:24   GUC-U-GCAACCGUGAGCCGUUUCUU   1   |||-|-|||*|||||||*|||||||| targets:297   CAGCAUCGUGGGCACUCAGCAAAGAA   322 Target Full Sequence	2.5	PREDICTED: Zea mays forkhead box protein L2-like (LOC109943061), mRNA	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   *||=-||*|||||||||||||||= targets:1077   GAGG-GUCGGCACUCGGCAAAGAG   1099 Target Full Sequence	2.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   *||=|**|*||||||||||||||| targets:9   AAGGCCAUAGCACUCGGCAAAGAA   32 Target Full Sequence	3.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   *||=|**|*||||||||||||||| targets:9   AAGGCCAUAGCACUCGGCAAAGAA   32 Target Full Sequence	3.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   GUCUGCAACCGUGAGCCGUUUCUU   1   *||=|**|*||||||||||||||| targets:9   AAGGCCAUAGCACUCGGCAAAGAA   32 Target Full Sequence	3.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget