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BaseInfo

ncRNA ID	novel_zma_miR12168
Species	Zea mays
Class	miRNA
Genome position	Chr2:11474103-11474179 [+]
Reference genome	RefGen_v4
Source	SRR5105959
Length	21
Mature sequence(if miRNA)	57 - UCUGCUCUCCGUCGAUGGAAG - 77
Stem-loop(if miRNA)	--            AA     -CCAUUCU    ---C   C   UCCAUCGAUGGA  GGGCG        GUGA    AGC C   ||||||||||||  |||||        ||||    ||| C   AGGUAGCUGCCU  CUCGU        CGCU    UCG C GA            --     CUCACCCU    CCAA   U
Stem-loop sequence	UCCAUCGAUGGAAAGGGCGCCAUUCUGUGACAGCCCCCUGCUAACCUCGCUCCCACUCUGCUCUCCGUCGAUGGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552545.1	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ||||||||||||||||||||| targets:659   CUUCCAUCGACGGAGAGCAGA   679 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100279330 (LOC100279330), mRNA	NA	coding protein	psRNATarget
BT054050.2	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ||||||||||||||||||||| targets:3004   CUUCCAUCGACGGAGAGCAGA   3024 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0153B17 mRNA, complete cds	NA	coding protein	psRNATarget
BT084632.1	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ||||||*|||||||||||=|| targets:324   CUUCCACCGACGGAGAGCGGA   344 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0149C02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657059.2	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ||||||*|*|||||||||||| targets:1625   CUUCCAACUACGGAGAGCAGA   1645 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383493 (LOC100383493), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT067369.1	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ||||||*|*|||||||||||| targets:2116   CUUCCAACUACGGAGAGCAGA   2136 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0027E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176141.1	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ||||||*|*|||||||||||| targets:2116   CUUCCAACUACGGAGAGCAGA   2136 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383493 (LOC100383493), mRNA	NA	coding protein	psRNATarget
XM_008657058.2	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ||||||*|*|||||||||||| targets:2104   CUUCCAACUACGGAGAGCAGA   2124 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383493 (LOC100383493), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655214.2	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ****|=||||||||||||||| targets:5527   GAAGCGUCGACGGAGAGCAGA   5547 Target Full Sequence	3.0	PREDICTED: Zea mays protein CHROMATIN REMODELING 5-like (LOC103633530), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020540742.1	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ****|=||||||||||||||| targets:5543   GAAGCGUCGACGGAGAGCAGA   5563 Target Full Sequence	3.0	PREDICTED: Zea mays protein CHROMATIN REMODELING 5-like (LOC103633530), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540743.1	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ****|=||||||||||||||| targets:5565   GAAGCGUCGACGGAGAGCAGA   5585 Target Full Sequence	3.0	PREDICTED: Zea mays protein CHROMATIN REMODELING 5-like (LOC103633530), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540744.1	ncRNA:21   GAAGGUAGCUGCCUCUCGUCU   1   ****|=||||||||||||||| targets:5693   GAAGCGUCGACGGAGAGCAGA   5713 Target Full Sequence	3.0	PREDICTED: Zea mays protein CHROMATIN REMODELING 5-like (LOC103633530), transcript variant X4, mRNA	NA	coding protein	psRNATarget