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BaseInfo

ncRNA ID	novel_zma_miR12160
Species	Zea mays
Class	miRNA
Genome position	Chr1:80670725-80670852 [-]
Reference genome	RefGen_v4
Source	SRR5105959;SRR5105961
Length	21
Mature sequence(if miRNA)	1 - UUGUGACUCUCAAACUAGCCC - 21
Stem-loop(if miRNA)	--             - -      ACU                G                 C   A   GCUAGUUUGGGAG C UAAAAU   GGAGGGAAUUGGAGGG CUAAAAUCCCCUUCUUA UCA A   ||||||||||||| | ||||||   |||||||||||||||| ||||||||||||||||| |||   CGAUCAAACUCUC G GUUUUA   CCUCCCUUAACCUCCC GAUUUUAGGGGAAGAAU AGU A CC             A U      --G                A                 A   U
Stem-loop sequence	GCUAGUUUGGGAGCUAAAAUACUGGAGGGAAUUGGAGGGGCUAAAAUCCCCUUCUUACUCAAAAUUGAAUAAGAAGGGGAUUUUAGACCCUCCAAUUCCCUCCGAUUUUGUGACUCUCAAACUAGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008666769.2	ncRNA:21   CCCGAUCAAACUCUCAGUGUU   1   ||||||||||||||||||||| targets:1528   GGGCUAGUUUGAGAGUCACAA   1548 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666769.2	ncRNA:21   CCCGAUCAAACUCUCAGUGUU   1   |||||||||||=||||||||| targets:1590   GGGCUAGUUUGGGAGUCACAA   1610 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235123.1	ncRNA:21   CCCGAUCAAACUCUCAGUGUU   1   |||||||||||=||||||||| targets:2   GGGCUAGUUUGGGAGUCACAA   22 Target Full Sequence	1.5	Sequence 1118 from Patent EP2985353	NA	coding protein	psRNATarget
HI402993.1	ncRNA:21   CCCGAUCAAACUCUCAGUGUU   1   |||||||||||=||||||||| targets:2   GGGCUAGUUUGGGAGUCACAA   22 Target Full Sequence	1.5	Sequence 1118 from Patent EP2074227	NA	coding protein	psRNATarget
JB163454.1	ncRNA:21   CCCGAUCAAACUCUCAGUGUU   1   |||||||||||=||||||||| targets:2   GGGCUAGUUUGGGAGUCACAA   22 Target Full Sequence	1.5	Sequence 1118 from Patent EP2559767	NA	coding protein	psRNATarget
BT067022.1	ncRNA:21   CCCGAUCAAACUCUCAGUGUU   1   ||||||||||||||||||=|| targets:1328   GGGCUAGUUUGAGAGUCAUAA   1348 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0156K10 mRNA, complete cds	NA	coding protein	psRNATarget
AY105026.1	ncRNA:21   CCCGAUCAAACUCUCAGUGUU   1   ||||||||||||||||||=|| targets:1269   GGGCUAGUUUGAGAGUCAUAA   1289 Target Full Sequence	1.5	Zea mays PCO062519 mRNA sequence	NA	coding protein	psRNATarget