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BaseInfo

ncRNA ID novel_zma_miR12140
Species Zea mays
Class miRNA
Genome position Chr10:114935299-114935456 [+]
Reference genome RefGen_v4
Source SRR5105959
Length 24
Mature sequence(if miRNA) 135 - UCUAAUGGAUUAGAUGGUUUGCUU - 158
Stem-loop(if miRNA) --             C         CG                C   UUUAACACUUAAACCCUUCC    CUAGCUCAAUAAUCUUUA
  GCAAACCAUCUAA CCAUUAGAU  UGAUCCAACCGUAGGU ACA                    ACCA                  U
  ||||||||||||| |||||||||  |||||||||||||||| |||                    ||||                  A
  CGUUUGGUAGAUU GGUAAUCUA  GCUAGGUUGGUAUCUA UGU                    UGGU                  A
UU             A         AU                -   --------------------    ACCAAACAAUCCCCCAAA
Stem-loop sequence GCAAACCAUCUAACCCAUUAGAUCGUGAUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACCACUAGCUCAAUAAUCUUUAUAAAAACCCCCUAACAAACCAUGGUUGUAUCUAUGGUUGGAUCGUAAUCUAAUGGAUUAGAUGGUUUGCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403395.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  ||||||||||||||||||||||||
targets:31   AAGCAAACCAUCUAAUCCAUUAGA   54

0.0 Sequence 1520 from Patent EP2074227 NA coding protein psRNATarget
JB163856.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  ||||||||||||||||||||||||
targets:31   AAGCAAACCAUCUAAUCCAUUAGA   54

0.0 Sequence 1520 from Patent EP2559767 NA coding protein psRNATarget
LQ235525.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  ||||||||||||||||||||||||
targets:31   AAGCAAACCAUCUAAUCCAUUAGA   54

0.0 Sequence 1520 from Patent EP2985353 NA coding protein psRNATarget
JB163917.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||||||||=||||||||||
targets:32   AAGCAAACCAUCUGAUCCAUUAGA   55

1.5 Sequence 1581 from Patent EP2559767 NA coding protein psRNATarget
HI403456.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||||||||=||||||||||
targets:32   AAGCAAACCAUCUGAUCCAUUAGA   55

1.5 Sequence 1581 from Patent EP2074227 NA coding protein psRNATarget
LQ235586.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||||||||=||||||||||
targets:32   AAGCAAACCAUCUGAUCCAUUAGA   55

1.5 Sequence 1581 from Patent EP2985353 NA coding protein psRNATarget
LQ235556.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||||||||=||||||||||
targets:30   AAGCAAACCAUCUGAUCCAUUAGA   53

1.5 Sequence 1551 from Patent EP2985353 NA coding protein psRNATarget
JB163887.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||||||||=||||||||||
targets:30   AAGCAAACCAUCUGAUCCAUUAGA   53

1.5 Sequence 1551 from Patent EP2559767 NA coding protein psRNATarget
HI403426.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||||||||=||||||||||
targets:30   AAGCAAACCAUCUGAUCCAUUAGA   53

1.5 Sequence 1551 from Patent EP2074227 NA coding protein psRNATarget
BT066599.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  ||||||||=||||=||||||||||
targets:673   AAGCAAACUAUCUGAUCCAUUAGA   696

2.5 Zea mays full-length cDNA clone ZM_BFb0034B07 mRNA, complete cds NA coding protein psRNATarget
HI402933.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||=|||||||||=||||||||||
targets:39   AAGUAAACCAUCUGAUCCAUUAGA   62

1.5 Sequence 1058 from Patent EP2074227 NA coding protein psRNATarget
LQ235063.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||=|||||||||=||||||||||
targets:39   AAGUAAACCAUCUGAUCCAUUAGA   62

1.5 Sequence 1058 from Patent EP2985353 NA coding protein psRNATarget
JB163394.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||=|||||||||=||||||||||
targets:39   AAGUAAACCAUCUGAUCCAUUAGA   62

1.5 Sequence 1058 from Patent EP2559767 NA coding protein psRNATarget
XM_008679933.2
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||||||||*||||||||||
targets:1658   AAGCAAACCAUCUUAUCCAUUAGA   1681

1.5 PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001151629.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||=|||||*||||||||||
targets:2064   AAGCAAAUCAUCUCAUCCAUUAGA   2087

2.5 Zea mays uncharacterized LOC100278316 (si946092e03), mRNA NA coding protein psRNATarget
EU972964.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||=|||||*||||||||||
targets:2064   AAGCAAAUCAUCUCAUCCAUUAGA   2087

2.5 Zea mays clone 390894 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020548736.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  ||*=||||||||||||||||||||
targets:1684   AAAUAAACCAUCUAAUCCAUUAGA   1707

0.0 PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA NA coding protein psRNATarget
LQ241182.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||=|||||*||||||||||
targets:39   AAGCAAAUCAUCUCAUCCAUUAGA   62

2.5 Sequence 7177 from Patent EP2985353 NA coding protein psRNATarget
HI409052.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||=|||||*||||||||||
targets:39   AAGCAAAUCAUCUCAUCCAUUAGA   62

2.5 Sequence 7177 from Patent EP2074227 NA coding protein psRNATarget
JB169513.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  |||||||=|||||*||||||||||
targets:39   AAGCAAAUCAUCUCAUCCAUUAGA   62

2.5 Sequence 7177 from Patent EP2559767 NA coding protein psRNATarget
HI403147.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  ||||||*||||||=||||||||||
targets:31   AAGCAAUCCAUCUGAUCCAUUAGA   54

2.5 Sequence 1272 from Patent EP2074227 NA coding protein psRNATarget
JB163608.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  ||||||*||||||=||||||||||
targets:31   AAGCAAUCCAUCUGAUCCAUUAGA   54

2.5 Sequence 1272 from Patent EP2559767 NA coding protein psRNATarget
LQ235277.1
ncRNA:24   UUCGUUUGGUAGAUUAGGUAAUCU   1
  ||||||*||||||=||||||||||
targets:31   AAGCAAUCCAUCUGAUCCAUUAGA   54

2.5 Sequence 1272 from Patent EP2985353 NA coding protein psRNATarget
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