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BaseInfo

ncRNA ID novel_zma_miR12123
Species Zea mays
Class miRNA
Genome position Chr1:202619649-202619760 [+]
Reference genome RefGen_v4
Source SRR1997865
Length 22
Mature sequence(if miRNA) 91 - UGUAGGAAACGGAUGACGCCUA - 112
Stem-loop(if miRNA) --  UA  C    -C     C   AAA     ---    CU   A  ---GG      UA
  GG  UC AUCC  UUCCU UAA   GUGUC   GGCU  UUU GC     UGAAGC  A
  ||  || ||||  ||||| |||   |||||   ||||  ||| ||     ||||||
  CC  AG UAGG  AAGGA GUU   CAUAG   CCGG  AAA CG     ACUUUG  A
AU  GC  -    CA     U   AAC     UCU    CC   C  AGUAA      CG
Stem-loop sequence GGUAUCCAUCCCUUCCUCUAAAAAGUGUCGGCUCUUUUAGCGGUGAAGCUAAAGCGUUUCAAAUGAGCCAAACCGGCCUCUGAUACCAAUUGUAGGAAACGGAUGACGCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT016820.1
ncRNA:22   AUCCGCAGUAGGCAAAGGAUGU   1
  |||||||||*||||||||||||
targets:1090   UAGGCGUCACCCGUUUCCUACA   1111

1.5 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
EU943181.1
ncRNA:22   AUCCGCAGUAGGCAAAGGAUGU   1
  |||||||||*||||||||||||
targets:1823   UAGGCGUCACCCGUUUCCUACA   1844

1.5 Zea mays clone 1580698 mRNA sequence NA coding protein psRNATarget