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BaseInfo

ncRNA ID	novel_zma_miR12117
Species	Zea mays
Class	miRNA
Genome position	Chr9:124220630-124220670 [-]
Reference genome	RefGen_v4
Source	SRR5105959
Length	20
Mature sequence(if miRNA)	22 - CAACAACUUUUGAACUAACU - 41
Stem-loop(if miRNA)	--   C  C          A   CAA AA UUUUGAACUA C   ||| || |||||||||| U   GUU UU AAAACUUGAU C AG   A  A          U
Stem-loop sequence	CAACAACUUUUGAACUAACUCUUAGUUCAAAAAUUAUUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547943.1	ncRNA:20   UC-AAUCAAGUUUUCAACAAC   1   ||-|||||||||||||||||| targets:3394   AGAUUAGUUCAAAAGUUGUUG   3414 Target Full Sequence	2.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547944.1	ncRNA:20   UC-AAUCAAGUUUUCAACAAC   1   ||-|||||||||||||||||| targets:3379   AGAUUAGUUCAAAAGUUGUUG   3399 Target Full Sequence	2.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547945.1	ncRNA:20   UC-AAUCAAGUUUUCAACAAC   1   ||-|||||||||||||||||| targets:3250   AGAUUAGUUCAAAAGUUGUUG   3270 Target Full Sequence	2.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001177200.1	ncRNA:20   UC-AAUCAAGUUUUCAACAAC   1   ||-|||||||||||||||||| targets:1265   AGAUUAGUUCAAAAGUUGUUG   1285 Target Full Sequence	2.0	Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA	NA	coding protein	psRNATarget
BT084075.1	ncRNA:20   UC-AAUCAAGUUUUCAACAAC   1   ||-|||||||||||||||||| targets:1265   AGAUUAGUUCAAAAGUUGUUG   1285 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds	NA	coding protein	psRNATarget
JB167517.1	ncRNA:20   UCAAUCAAGUUUUCAACAAC   1   |||||||||||||*|||||| targets:58   AGUUAGUUCAAAAAUUGUUG   77 Target Full Sequence	1.5	Sequence 5181 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239186.1	ncRNA:20   UCAAUCAAGUUUUCAACAAC   1   |||||||||||||*|||||| targets:58   AGUUAGUUCAAAAAUUGUUG   77 Target Full Sequence	1.5	Sequence 5181 from Patent EP2985353	NA	coding protein	psRNATarget
HI407056.1	ncRNA:20   UCAAUCAAGUUUUCAACAAC   1   |||||||||||||*|||||| targets:58   AGUUAGUUCAAAAAUUGUUG   77 Target Full Sequence	1.5	Sequence 5181 from Patent EP2074227	NA	coding protein	psRNATarget