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BaseInfo

ncRNA ID novel_zma_miR12110
Species Zea mays
Class miRNA
Genome position Chr9:130136547-130136623 [+]
Reference genome RefGen_v4
Source SRR5105959
Length 20
Mature sequence(if miRNA) 1 - AUCACGUGAGGAUUGGAGGG - 20
Stem-loop(if miRNA) --      U A           -A    --U      AUU
  AUCACG G GGAUUGGAGGG  UUGA   GGGAAA   A
  |||||| | |||||||||||  ||||   ||||||   G
  UAGUGC C CCUAACCUCCC  AACU   CCCUUU   U
CC      - C           CC    CCC      ACU
Stem-loop sequence AUCACGUGAGGAUUGGAGGGAUUGAUGGGAAAAUUAGUUCAUUUCCCCCCUCAACCCCCUCCAAUCCCCCGUGAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163954.1
ncRNA:20   GGGAGGUUAGGAGUGCACUA   1
  |||||||||||||*||||||
targets:44   CCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
LQ235623.1
ncRNA:20   GGGAGGUUAGGAGUGCACUA   1
  |||||||||||||*||||||
targets:44   CCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
HI403493.1
ncRNA:20   GGGAGGUUAGGAGUGCACUA   1
  |||||||||||||*||||||
targets:44   CCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget