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BaseInfo

ncRNA ID	novel_zma_miR12106
Species	Zea mays
Class	miRNA
Genome position	Chr1:185873663-185873824 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	21
Mature sequence(if miRNA)	142 - UGGCCUAGAUUAGAAGUUUGC - 162
Stem-loop(if miRNA)	--              AA      G        C    GG   GU   GAGA     -   GGG     GAAAAA  G      G A   AAACUUCUAAUCUG  CCACAU AUGUUGAU CAAG  GAC  GCG    GAGUG GGA   GAUUU      GU UGAUUA C A   ||||||||||||||  |||||| |||||||| ||||  |||  |||    ||||| |||   |||||      || |||||| |   UUUGAAGAUUAGAU  GGUGUA UACAACUA GUUC  CUG  UGU    CUCGC CCU   UUAAA      UA AUUGGU G C CG              CC      G        A    -A   --   ---A     A   --A     ---AUG  A      G G
Stem-loop sequence	AAACUUCUAAUCUGAACCACAUGAUGUUGAUCCAAGGGGACGUGCGGAGAGAGUGGGAGGGGAUUUGAAAAAGUGUGAUUAGCAACGGGUGGUUAAAUGUAAAAUUAUCCACGCUCAUGUGUCACUUGAAUCAACAUGAUGUGGCCUAGAUUAGAAGUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547993.1	ncRNA:21   CGUUUGAAGAUUAGAUCCGGU   1   ||||||||=|||||||||||| targets:1473   GCAAACUUUUAAUCUAGGCCA   1493 Target Full Sequence	1.5	PREDICTED: Zea mays trehalose-6-phosphate phosphatase2 (LOC107546758), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235050.1	ncRNA:20   GUUUGAAGAUUAGAUCCGGU   1   ||||||||||||||=||||| targets:1   CAAACUUCUAAUCUGGGCCA   20 Target Full Sequence	1.5	Sequence 1045 from Patent EP2985353	NA	coding protein	psRNATarget
JB163381.1	ncRNA:20   GUUUGAAGAUUAGAUCCGGU   1   ||||||||||||||=||||| targets:1   CAAACUUCUAAUCUGGGCCA   20 Target Full Sequence	1.5	Sequence 1045 from Patent EP2559767	NA	coding protein	psRNATarget
HI402920.1	ncRNA:20   GUUUGAAGAUUAGAUCCGGU   1   ||||||||||||||=||||| targets:1   CAAACUUCUAAUCUGGGCCA   20 Target Full Sequence	1.5	Sequence 1045 from Patent EP2074227	NA	coding protein	psRNATarget
BT069266.2	ncRNA:21   CGUUUGAAGAUUAGAUCCGGU   1   ||=|||*|||||||||||||* targets:1966   GCGAACAUCUAAUCUAGGCCC   1986 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0026O09 mRNA, complete cds	NA	coding protein	psRNATarget