Search result

BaseInfo

ncRNA ID novel_zma_miR12100
Species Zea mays
Class miRNA
Genome position Chr8:101633928-101634036 [-]
Reference genome RefGen_v4
Source SRR5105959
Length 24
Mature sequence(if miRNA) 1 - UUGCCGAGUGGUCUGUUAGUGGGC - 24
Stem-loop(if miRNA) --            -     A    ------------    ----U            C   C
  CCACUGACAGAC ACUCG CAAA            GGUG     CUUUGCCGAGUG CAU C
  |||||||||||| ||||| ||||            ||||     |||||||||||| |||
  GGUGAUUGUCUG UGAGC GUUU            CCAC     GAAACGGCUCAC GUG G
CG            G     C    CUUAACUGAAUC    UUUAU            A   U
Stem-loop sequence CCACUGACAGACACUCGACAAAGGUGUCUUUGCCGAGUGCCAUCCGUGUGACACUCGGCAAAGUAUUUCACCCUAAGUCAAUUCUUUGCCGAGUGGUCUGUUAGUGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT084516.2
ncRNA:24   CGGGUGAUUGUCUGGUGAGCCGUU   1
  *|*=||||*|||||||||*|||||
targets:357   ACGUACUACCAGACCACUGGGCAA   380

2.5 Zea mays full-length cDNA clone ZM_BFb0126A11 mRNA, complete cds NA coding protein psRNATarget