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BaseInfo

ncRNA ID	novel_zma_miR12094
Species	Zea mays
Class	miRNA
Genome position	Chr8:153649824-153649938 [-]
Reference genome	RefGen_v4
Source	SRR5105959;SRR5105961;SRR5105963
Length	21
Mature sequence(if miRNA)	1 - UCGGUUUUGUGGCUUCCAAAC - 21
Stem-loop(if miRNA)	--    U  U   -          GG     GA            C  G         A   UUGG AG CCA AAAACUGGAG  GAUUG  GGGGCUAAAAUU CC UUUUAUUCA U   |||| || ||| ||||||||||  |||||  |||||||||||| || |||||||||   AACC UC GGU UUUUGGCUUC  UUAAC  UCCCGAUUUUAA GG AGAAUAAGU U CA    U  -   G          UA     -A            A  A         U
Stem-loop sequence	UUGGUAGUCCAAAAACUGGAGGGGAUUGGAGGGGCUAAAAUUCCCGUUUUAUUCAAUUUUGAAUAAGAAGGAAAUUUUAGCCCUACAAUUAUCUUCGGUUUUGUGGCUUCCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020537662.1	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   ||||||=|||||||||||||| targets:11596   GUUUGGGAGCCACAAAACCGA   11616 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100381565 (LOC100381565), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001151652.1	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   ||||||=|||||||||||||= targets:1204   GUUUGGGAGCCACAAAACCGG   1224 Target Full Sequence	2.0	Zea mays uncharacterized LOC100278349 (LOC100278349), mRNA	NA	coding protein	psRNATarget
EU973182.1	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   ||||||=|||||||||||||= targets:1204   GUUUGGGAGCCACAAAACCGG   1224 Target Full Sequence	2.0	Zea mays clone 394629 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659944.2	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   ||||||=|||=|||||||||| targets:3476   GUUUGGGAGCUACAAAACCGA   3496 Target Full Sequence	2.5	PREDICTED: Zea mays translocase of chloroplast 120, chloroplastic (LOC103637626), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008659946.2	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   ||||||=|||=|||||||||| targets:3485   GUUUGGGAGCUACAAAACCGA   3505 Target Full Sequence	2.5	PREDICTED: Zea mays translocase of chloroplast 120, chloroplastic (LOC103637626), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   *|||||||||||||||||||= targets:1083   CUUUGGAAGCCACAAAACCGG   1103 Target Full Sequence	1.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008662350.2	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   |||||*||||||||||||||= targets:5206   GUUUGAAAGCCACAAAACCGG   5226 Target Full Sequence	2.0	PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT062399.1	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   *||||||||||||||||||** targets:998   AUUUGGAAGCCACAAAACCAC   1018 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292G10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001351707.1	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   *||||||||||||||||||** targets:1025   AUUUGGAAGCCACAAAACCAC   1045 Target Full Sequence	2.5	Zea mays cold acclimation protein COR413-TM1 (COR413-TM1), mRNA	NA	coding protein	psRNATarget
BT054274.1	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   *||||||||||||||||||** targets:1897   AUUUGGAAGCCACAAAACCAC   1917 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0208K23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ081804.1	ncRNA:20   AAACCUUCGGUGUUUUGGCU   1   |||||=||||||||*||||| targets:1   UUUGGGAGCCACAAUACCGA   20 Target Full Sequence	2.5	TSA: Zea mays contig17445, mRNA sequence	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:21   CAAACCUUCGGUGUUUUGGCU   1   ||||**=|||||||||||||| targets:4048   GUUUAAGAGCCACAAAACCGA   4068 Target Full Sequence	3.0	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget