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BaseInfo

ncRNA ID	novel_zma_miR12084
Species	Zea mays
Class	miRNA
Genome position	Chr7:54844899-54844994 [+]
Reference genome	RefGen_v4
Source	SRR5105959
Length	24
Mature sequence(if miRNA)	73 - GCACUCGGCAAAGAACCUAACAUG - 96
Stem-loop(if miRNA)	---UA                   GGUG  -CCU              AG      UAGGUUCUUUGCCGAGUGC    GC    GGCACUCGGCAAAG  G      |||||||||||||||||||    ||    ||||||||||||||  C      AUCCAAGAAACGGCUCACG    CG    CCGUGAGCCGUUUC  A GUACA                   ---A  UAUC              GC
Stem-loop sequence	UAUAGGUUCUUUGCCGAGUGCGGUGGCCCUGGCACUCGGCAAAGAGGCACGCUUUGCCGAGUGCCCUAUGCAGCACUCGGCAAAGAACCUAACAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241915.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   |||||*|||||||||||||||||| targets:73   CAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	1.0	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   |||||*|||||||||||||||||| targets:73   CAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	1.0	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   |||||*|||||||||||||||||| targets:73   CAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	1.0	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   *=||||=|*||||||||||||||| targets:45   AGUGUUGGCUUCUUUGCCGAGUGC   68 Target Full Sequence	2.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   *=||||=|*||||||||||||||| targets:1144   AGUGUUGGCUUCUUUGCCGAGUGC   1167 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   *=||||=|*||||||||||||||| targets:1281   AGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   *=||||=|*||||||||||||||| targets:1281   AGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
JB169026.1	ncRNA:21   CAAUCCAAGAAACGGCUCACG   1   *|||||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	1.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:21   CAAUCCAAGAAACGGCUCACG   1   *|||||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	1.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI408565.1	ncRNA:21   CAAUCCAAGAAACGGCUCACG   1   *|||||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	1.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   |**||-||||||||||||||||||= targets:36   CCGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   |**||-||||||||||||||||||= targets:36   CCGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   |**||-||||||||||||||||||= targets:36   CCGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   |**||-||||||||||||||||||= targets:173   CCGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   GUACAAUCC-AAGAAACGGCUCACG   1   ******|||-||||||||||||||| targets:9   GCAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   |**||-||||||||||||||||||= targets:173   CCGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   GUACAAUCC-AAGAAACGGCUCACG   1   ******|||-||||||||||||||| targets:9   GCAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   |**||-||||||||||||||||||= targets:173   CCGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   GUACAAUCC-AAGAAACGGCUCACG   1   ******|||-||||||||||||||| targets:9   GCAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   |||||*|*||*||||||||||||| targets:119   CAUGUCAUGUACUUUGCCGAGUGC   142 Target Full Sequence	3.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   |||||*|*||*||||||||||||| targets:119   CAUGUCAUGUACUUUGCCGAGUGC   142 Target Full Sequence	3.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   |||||*|*||*||||||||||||| targets:119   CAUGUCAUGUACUUUGCCGAGUGC   142 Target Full Sequence	3.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   =|*||-|*||||||||||||||||| targets:45   UAGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	3.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   =|*||-|*||||||||||||||||| targets:45   UAGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	3.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   GUACA-AUCCAAGAAACGGCUCACG   1   =|*||-|*||||||||||||||||| targets:45   UAGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	3.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   *=****=||||||||||||||||= targets:584   GGCAAAGGGUUCUUUGCCGAGUGU   607 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   GUACAAUCC-AAGAAACGGCUCACG   1   ******|||-||||||||||||||| targets:1092   GCAAAGAGGCUUCUUUGCCGAGUGC   1116 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ239198.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   **||**=|*||||||||||||||| targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64 Target Full Sequence	3.0	Sequence 5193 from Patent EP2985353	NA	coding protein	psRNATarget
HI407068.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   **||**=|*||||||||||||||| targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64 Target Full Sequence	3.0	Sequence 5193 from Patent EP2074227	NA	coding protein	psRNATarget
JB167529.1	ncRNA:24   GUACAAUCCAAGAAACGGCUCACG   1   **||**=|*||||||||||||||| targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64 Target Full Sequence	3.0	Sequence 5193 from Patent EP2559767	NA	coding protein	psRNATarget