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BaseInfo

ncRNA ID	novel_zma_miR12076
Species	Zea mays
Class	miRNA
Genome position	Chr1:257135443-257135540 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	20
Mature sequence(if miRNA)	79 - AUAUAGUACUCCCUCCGUUU - 98
Stem-loop(if miRNA)	--AUAUA                                         A        GUACUCCCUCCGUUUCUUUUUAUUAGUCGCUGGAUAGUGCA A        |||||||||||||||||||||||||||||||||||||||||        CAUGAGGGAGGCAAAGAAAAAUAAUCAGCGACCUAUCACGU A AUUCAUC                                         U
Stem-loop sequence	AUAUAGUACUCCCUCCGUUUCUUUUUAUUAGUCGCUGGAUAGUGCAAAAUUGCACUAUCCAGCGACUAAUAAAAAGAAACGGAGGGAGUACCUACUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU965844.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   |||||||||||||||||||| targets:1358   AAACGGAGGGAGUACUAUAU   1377 Target Full Sequence	0.0	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   |||||||||||||||||||| targets:1358   AAACGGAGGGAGUACUAUAU   1377 Target Full Sequence	0.0	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
LQ235486.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   =||||||||||||||||*|| targets:81   GAACGGAGGGAGUACUAAAU   100 Target Full Sequence	1.5	Sequence 1481 from Patent EP2985353	NA	coding protein	psRNATarget
JB163817.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   =||||||||||||||||*|| targets:81   GAACGGAGGGAGUACUAAAU   100 Target Full Sequence	1.5	Sequence 1481 from Patent EP2559767	NA	coding protein	psRNATarget
HI403356.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   =||||||||||||||||*|| targets:81   GAACGGAGGGAGUACUAAAU   100 Target Full Sequence	1.5	Sequence 1481 from Patent EP2074227	NA	coding protein	psRNATarget
BT063269.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   =|||||||||||||*||||| targets:362   GAACGGAGGGAGUAGUAUAU   381 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0045K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174891.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   =|||||||||||||*||||| targets:362   GAACGGAGGGAGUAGUAUAU   381 Target Full Sequence	1.5	Zea mays arginine/serine-rich splicing factor RS2Z37A transcript I (RS2Z37A), mRNA	NA	coding protein	psRNATarget
KC424999.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   =|||||||||||||*||||| targets:367   GAACGGAGGGAGUAGUAUAU   386 Target Full Sequence	1.5	Zea mays arginine/serine-rich splicing factor RS2Z37A transcript III (RS2Z37A) mRNA, RS2Z37AIII allele, complete cds, alternatively spliced	NA	coding protein	psRNATarget
XM_020550135.1	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   ==||||||||||||||*||| targets:1714   GGACGGAGGGAGUACUUUAU   1733 Target Full Sequence	2.5	PREDICTED: Zea mays phospholipid-transporting ATPase 2-like (LOC103649838), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658304.2	ncRNA:20   UUUGCCUCCCUCAUGAUAUA   1   ==||||||||||||||*||| targets:3246   GGACGGAGGGAGUACUUUAU   3265 Target Full Sequence	2.5	PREDICTED: Zea mays 2-isopropylmalate synthase A (LOC103635930), mRNA	NA	coding protein	psRNATarget