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BaseInfo

ncRNA ID	novel_zma_miR12075
Species	Zea mays
Class	miRNA
Genome position	Chr1:258036459-258036542 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	1 - UUUGGCAAUUUAUGGACUAAA - 21
Stem-loop(if miRNA)	--                     A           -     G   UAGUUCAUAAAUUGUCAAAUA AGGAACUAAAA AUAGA A   ||||||||||||||||||||| ||||||||||| ||||| U   AUCAGGUAUUUAACGGUUUGU UUCUUGAUUUU UAUCU A AA                     G           G     A
Stem-loop sequence	UAGUUCAUAAAUUGUCAAAUAAAGGAACUAAAAAUAGAGAUAAUCUAUGUUUUAGUUCUUGUGUUUGGCAAUUUAUGGACUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001153051.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||=||||||||||||| targets:835   UUUAGUCUAUAAAUUGCCAAA   855 Target Full Sequence	1.0	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||=||||||||||||| targets:835   UUUAGUCUAUAAAUUGCCAAA   855 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||=||||||||||||| targets:859   UUUAGUCUAUAAAUUGCCAAA   879 Target Full Sequence	1.0	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008668788.2	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   ||||||=||||||||||=||| targets:1484   UUUAGUUCAUAAAUUGCUAAA   1504 Target Full Sequence	2.5	PREDICTED: Zea mays putative tetraacyldisaccharide 4-kinase family protein (LOC100272815), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546524.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   ||||||=||||||||||=||| targets:1204   UUUAGUUCAUAAAUUGCUAAA   1224 Target Full Sequence	2.5	PREDICTED: Zea mays probable tetraacyldisaccharide 4'-kinase, mitochondrial (LOC109943461), mRNA	NA	coding protein	psRNATarget
XM_008676145.2	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||=|||||||||=||| targets:878   UUUAGUCUAUAAAUUGCUAAA   898 Target Full Sequence	2.5	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget
EU942443.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||=|||||||||=||| targets:513   UUUAGUCUAUAAAUUGCUAAA   533 Target Full Sequence	2.5	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   ||||||||*|||||||||||| targets:2172   UUUAGUCCCUAAAUUGCCAAA   2192 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT064399.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||||||||||*||||| targets:1252   UUUAGUCCAUAAAUUACCAAA   1272 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0165L03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175194.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||||||||||*||||| targets:1252   UUUAGUCCAUAAAUUACCAAA   1272 Target Full Sequence	1.5	Zea mays putative HLH DNA-binding domain superfamily protein (LOC100382453), mRNA	NA	coding protein	psRNATarget
BT066502.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||||||||||*||||| targets:330   UUUAGUCCAUAAAUUACCAAA   350 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0013I13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||=|||||||||*||| targets:3010   UUUAGUCUAUAAAUUGCAAAA   3030 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||*|=||||||||||||| targets:2954   UUUAGACUAUAAAUUGCCAAA   2974 Target Full Sequence	2.0	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||=|||||||||*||| targets:2621   UUUAGUCUAUAAAUUGCAAAA   2641 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
DQ245862.1	ncRNA:21   AAAUCAGGUAUUUAACGGUUU   1   |||||||=*|||||||||||| targets:1083   UUUAGUCUCUAAAUUGCCAAA   1103 Target Full Sequence	2.5	Zea mays clone 21092 mRNA sequence	NA	coding protein	psRNATarget