Search result

BaseInfo

ncRNA ID	novel_zma_miR12074
Species	Zea mays
Class	miRNA
Genome position	Chr10:111336053-111336179 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	23
Mature sequence(if miRNA)	1 - GCAUGUUUGGUUUGUGGCUAACU - 23
Stem-loop(if miRNA)	---GC            -  G      G                -------------        - G  CG      AUGUUUGGUUUG UG CUAACU UGCCACACUUUGCCUA             AGGUUAGU C UC  A      |||||||||||| || |||||| ||||||||||||||||             |||||||| | ||      UACAAACCAAAC AC GAUUGA ACGGUGUGAAACGGAU             UCCAAUCA G AG  A UCCCU            G  G      -                UGAAAACACGGAU        A A  UU
Stem-loop sequence	GCAUGUUUGGUUUGUGGCUAACUGUGCCACACUUUGCCUAAGGUUAGUCGUCCGAAUUGAAGAACUAACCUUAGGCACAAAAGUUAGGCAAAGUGUGGCAAGUUAGGCAGCAAACCAAACAUUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163747.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   ||||||||||=|||||||||||= targets:105   AGUUAGCCACGAACCAAACAUGU   127 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   ||||||||||=|||||||||||= targets:105   AGUUAGCCACGAACCAAACAUGU   127 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403286.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   ||||||||||=|||||||||||= targets:105   AGUUAGCCACGAACCAAACAUGU   127 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||||||||||||||||||| targets:1408   AUUUAGCCACAAACCAAACAUGC   1430 Target Full Sequence	0.0	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||||||||||||||||||| targets:885   AUUUAGCCACAAACCAAACAUGC   907 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   ||||||||||||||||||||*|| targets:2660   AGUUAGCCACAAACCAAACAAGC   2682 Target Full Sequence	1.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
BT064583.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||=||=||||||||||||| targets:1733   AUUUAGUCAUAAACCAAACAUGC   1755 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
EU960971.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||=||=||||||||||||| targets:1803   AUUUAGUCAUAAACCAAACAUGC   1825 Target Full Sequence	2.0	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||=||=||||||||||||| targets:1803   AUUUAGUCAUAAACCAAACAUGC   1825 Target Full Sequence	2.0	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
HI403425.1	ncRNA:23   UCAAUCGGU-GUUUGGUUUGUACG   1   ||||||*||-|||||||||||||| targets:104   AGUUAGGCAGCAAACCAAACAUGC   127 Target Full Sequence	3.0	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:23   UCAAUCGGU-GUUUGGUUUGUACG   1   ||||||*||-|||||||||||||| targets:104   AGUUAGGCAGCAAACCAAACAUGC   127 Target Full Sequence	3.0	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
JB163886.1	ncRNA:23   UCAAUCGGU-GUUUGGUUUGUACG   1   ||||||*||-|||||||||||||| targets:104   AGUUAGGCAGCAAACCAAACAUGC   127 Target Full Sequence	3.0	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||||||||||||||||*|| targets:993   AAUUAGCCACAAACCAAACAGGC   1015 Target Full Sequence	1.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||||||||||||||||*|| targets:941   AUUUAGCCACAAACCAAACAGGC   963 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||||||||||||||||*|| targets:1425   AUUUAGCCACAAACCAAACAGGC   1447 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*||||||||||||||||||*|| targets:1583   AUUUAGCCACAAACCAAACAGGC   1605 Target Full Sequence	1.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*|||*||||||||||||||*|| targets:213   AUUUAACCACAAACCAAACAGGC   235 Target Full Sequence	2.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:23   UCAAUCGGUGUUUGGUUUGUACG   1   |*|||*||||||||||||||*|| targets:213   AUUUAACCACAAACCAAACAGGC   235 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget