Search result

BaseInfo

ncRNA ID	novel_zma_miR12070
Species	Zea mays
Class	miRNA
Genome position	Chr9:66563884-66563938 [+]
Reference genome	RefGen_v4
Source	SRR1997865;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AACUUUCGACGGGAUGGCUUAACU - 24
Stem-loop(if miRNA)	--        AC   A     U     C   AACUUUCG  GGG UGGCU AACUU C   ||||||||  ||| ||||| |||||   UUGAGAGC  UUC AUCGA UUGAG G AU        -C   A     U     A
Stem-loop sequence	AACUUUCGACGGGAUGGCUUAACUUCCGAGAGUUUAGCUAACUUCCGAGAGUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020553436.1	ncRNA:24   UCAAUUCGGUAGGGCAGCUUUCAA   1   |||*||||||||||||||=||||| targets:1668   AGUGAAGCCAUCCCGUCGGAAGUU   1691 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT062217.1	ncRNA:24   UCAAUUCGGUAGGGCAGCUUUCAA   1   |||*||||||||||||||=||||| targets:1538   AGUGAAGCCAUCCCGUCGGAAGUU   1561 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0228H22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682719.2	ncRNA:24   UCAAUUCGGUAGGGCAGCUUUCAA   1   |||*||||||||||||||=||||| targets:1668   AGUGAAGCCAUCCCGUCGGAAGUU   1691 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553435.1	ncRNA:24   UCAAUUCGGUAGGGCAGCUUUCAA   1   |||*||||||||||||||=||||| targets:4428   AGUGAAGCCAUCCCGUCGGAAGUU   4451 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X2, mRNA	NA	coding protein	psRNATarget