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BaseInfo

ncRNA ID	novel_zma_miR12068
Species	Zea mays
Class	miRNA
Genome position	Chr1:2990491-2990585 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	23
Mature sequence(if miRNA)	73 - CUCCAAUCCCCUUCGAUCCAGAC - 95
Stem-loop(if miRNA)	--             U   -A               --   ---    UU   CUGGAUCGAAGGG AUU  AGGGGGAUUAAAUCC  CCU   UCAA  C   ||||||||||||| |||  |||||||||||||||  |||   ||||  A   GACCUAGCUUCCC UAA  UCCCCCUAAUUUAGG  GGG   AGUU  A CA             C   CC               UA   AUC    UU
Stem-loop sequence	CUGGAUCGAAGGGUAUUAAGGGGGAUUAAAUCCCCUUCAAUUCAAUUUUGACUAGGGAUGGAUUUAAUCCCCCUCCAAUCCCCUUCGAUCCAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069231.2	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   ||||||||||||||||||||||| targets:988   GUCUGGAUCGAAGGGGAUUGGAG   1010 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   ||||||||||||||*|||||||| targets:14   GUCUGGAUCGAAGGAGAUUGGAG   36 Target Full Sequence	1.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   ||||||||||||||*|||||||| targets:14   GUCUGGAUCGAAGGAGAUUGGAG   36 Target Full Sequence	1.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   ||||||||||||||*|||||||| targets:14   GUCUGGAUCGAAGGAGAUUGGAG   36 Target Full Sequence	1.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
EU941872.1	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   *||*||||=|||||||||||||| targets:56   UUCGGGAUUGAAGGGGAUUGGAG   78 Target Full Sequence	1.0	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
BT085111.1	ncRNA:23   CAG-----ACCUAGCUUCCCCUAACCUC   1   ||=-----|||||=|||||||||||||| targets:1267   GUUAGGAGUGGAUUGAAGGGGAUUGGAG   1294 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
BT042029.1	ncRNA:23   CAG-----ACCUAGCUUCCCCUAACCUC   1   ||=-----|||||=||=||||||||||| targets:183   GUUAGGAGUGGAUUGAGGGGGAUUGGAG   210 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114D19 mRNA, complete cds	NA	coding protein	psRNATarget
BT067503.1	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   |**|||||=|||*|||||||||| targets:838   GGGUGGAUUGAAAGGGAUUGGAG   860 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   |**|||||=|||*|||||||||| targets:838   GGGUGGAUUGAAAGGGAUUGGAG   860 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
EU975951.1	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   |***||||=|||*|||||||||| targets:62   GAGGGGAUUGAAAGGGAUUGGAG   84 Target Full Sequence	2.5	Zea mays clone 506398 mRNA sequence	NA	coding protein	psRNATarget
EU948932.1	ncRNA:23   CAGACCUAGCUUCCCCUAACCUC   1   |***||||=||||||||||||*| targets:446   GAAGGGAUUGAAGGGGAUUGGUG   468 Target Full Sequence	2.5	Zea mays clone 390623 mRNA sequence	NA	coding protein	psRNATarget