Search result

BaseInfo

ncRNA ID	novel_zma_miR12061
Species	Zea mays
Class	miRNA
Genome position	Chr1:296926186-296926282 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAGAAAACCGCCACUAUAAAUCGU - 24
Stem-loop(if miRNA)	--                U    CG --          -----UUC     C   AAGAAAACCGCCACUA AAAU  U  AUUUCUACAG        CUUAA U   |||||||||||||||| ||||  |  ||||||||||        |||||   UUCUUUUGGCGGUGAU UUUA  A  UAAAGAUGUC        GAAUU C AA                C    AU CC          UAUCAAAA     C
Stem-loop sequence	AAGAAAACCGCCACUAUAAAUCGUAUUUCUACAGUUCCUUAACUCCUUAAGAAAACUAUCUGUAGAAAUCCAUAAUUUCUAGUGGCGGUUUUCUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943186.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||=|||||||||||||||| targets:1966   AUGAUUUGUAGUGGCGGUUUUCUU   1989 Target Full Sequence	1.0	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.0	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.0	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.0	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.0	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.0	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.0	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.0	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.0	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   |=|||||*|||||||||||||||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.0	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235156.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   *||||||*|||||||||||||||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.0	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
JB163487.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   *||||||*|||||||||||||||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.0	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   *||||||*|||||||||||||||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.0	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget
JB163515.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   **|||||*|||||||||||||||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55 Target Full Sequence	1.0	Sequence 1179 from Patent EP2559767	NA	coding protein	psRNATarget
HI403054.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   **|||||*|||||||||||||||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55 Target Full Sequence	1.0	Sequence 1179 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235184.1	ncRNA:24   UGCUAAAUAUCACCGCCAAAAGAA   1   **|||||*|||||||||||||||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55 Target Full Sequence	1.0	Sequence 1179 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001176701.1	ncRNA:24   UGC-UAAAUAUCACCGCCAAAAGAA   1   |=|-||||**|*||||||||||||| targets:868   AUGCAUUUUCACUGGCGGUUUUCUU   892 Target Full Sequence	3.0	Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA	NA	coding protein	psRNATarget
BT069194.2	ncRNA:24   UGC-UAAAUAUCACCGCCAAAAGAA   1   |=|-||||**|*||||||||||||| targets:868   AUGCAUUUUCACUGGCGGUUUUCUU   892 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds	NA	coding protein	psRNATarget