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BaseInfo

ncRNA ID	novel_zma_miR12050
Species	Zea mays
Class	miRNA
Genome position	Chr1:243009388-243009521 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAGGGCCUGUUUGGUUUGAUGCCU - 24
Stem-loop(if miRNA)	--A    C            A  C    -CU  C             ACUUUUCUGCCUA         C   A    AGGG CUGUUUGGUUUG UG CUAA   UG CACACUUUGCCUA             AGGUUAGUU UUC A    |||| |||||||||||| || ||||   || |||||||||||||             ||||||||| ||| U    UCCC GACAAACCAAGC AC GAUU   AC GUGUGAAACGGAU             UCCAAUCAG AAG U GAA    C            -  C    UAC  A             -------------         C   C
Stem-loop sequence	AAGGGCCUGUUUGGUUUGAUGCCUAACUUGCCACACUUUGCCUAACUUUUCUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGACACAUUUAGCCACGAACCAAACAGCCCCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ091125.1	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ||*|||||||||||||||||=||* targets:60   AGUCAUCAAACCAAACAGGCUCUA   83 Target Full Sequence	2.5	TSA: Zea mays contig26772, mRNA sequence	NA	coding protein	psRNATarget
EU943361.1	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ||*|||||||||||||||||=||* targets:244   AGUCAUCAAACCAAACAGGCUCUA   267 Target Full Sequence	2.5	Zea mays clone 1614023 mRNA sequence	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ||*|||||||||||||||*||||| targets:1258   AGUCAUCAAACCAAACAGACCCUU   1281 Target Full Sequence	1.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT037664.1	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ||*||||||||||||||*|||||* targets:1335   AGACAUCAAACCAAACAAGCCCUA   1358 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681615.2	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ||*|||||||||||||||*||||* targets:1780   AGUCAUCAAACCAAACAGACCCUC   1803 Target Full Sequence	2.5	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
NM_001154039.2	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ||*||||||||||||||*|||||* targets:2082   AGACAUCAAACCAAACAAGCCCUA   2105 Target Full Sequence	2.5	Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA	NA	coding protein	psRNATarget
EU955653.1	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ||*||||||||||||||*|||||* targets:2083   AGACAUCAAACCAAACAAGCCCUA   2106 Target Full Sequence	2.5	Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008665407.2	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ***=|||*|||||||||||||=|| targets:3403   UCAUAUCUAACCAAACAGGCCUUU   3426 Target Full Sequence	2.5	PREDICTED: Zea mays Putative SNF2-domain/RING finger domain/helicase domain protein (LOC103642087), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665409.2	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ***=|||*|||||||||||||=|| targets:3424   UCAUAUCUAACCAAACAGGCCUUU   3447 Target Full Sequence	2.5	PREDICTED: Zea mays Putative SNF2-domain/RING finger domain/helicase domain protein (LOC103642087), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ108020.1	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ***||||=|*|||||||||||||* targets:454   CUUCAUCGACCCAAACAGGCCCUC   477 Target Full Sequence	3.0	TSA: Zea mays contig43678, mRNA sequence	NA	coding protein	psRNATarget
AY108129.1	ncRNA:24   UCCGUAGUUUGGUUUGUCCGGGAA   1   ***||||=|*|||||||||||||* targets:566   CUUCAUCGACCCAAACAGGCCCUC   589 Target Full Sequence	3.0	Zea mays PCO069672 mRNA sequence	NA	coding protein	psRNATarget