Search result

BaseInfo

ncRNA ID novel_zma_miR12044
Species Zea mays
Class miRNA
Genome position Chr1:228558536-228558635 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 1 - ACGUACGUACUCCCUCCGUUUCUU - 24
Stem-loop(if miRNA) --AC                                           CAA
    GUACGUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUG   A
    |||||||||||||||||||||||||||||||||||||||||||
    CAUGCAUGAGGGAGGCAAAGAAAAAUAAACAGCGACCUAUCAC   A
UCAU                                           AUU
Stem-loop sequence ACGUACGUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGCAAAAUUACACUAUCCAGCGACAAAUAAAAAGAAACGGAGGGAGUACGUACUACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542418.1
ncRNA:24   UUCUUUGCCUCCCUCAUGCAUGCA   1
  ||||||||||||||||||||||**
targets:2042   AAGAAACGGAGGGAGUACGUACUA   2065

2.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   UUCUUUGCCUCCCUCAUGCAUGCA   1
  ||||||||||||||||||||||**
targets:2109   AAGAAACGGAGGGAGUACGUACUA   2132

2.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget