Search result

BaseInfo

ncRNA ID osa-miRf10801-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - CAUGUGGGUCCGGGUGGCAAAU - NA
Stem-loop(if miRNA)                  UA                  A   - UUACCUGGUCCCACA
CAUGCACAUUUGCCACC  GGCCUACAUGUCAGUCUC GCC G               U
|||||||||||||||||  |||||||||||||||||| ||| |
GUAUGUGUAAACGGUGG  CUGGGUGUACGGUCGGAG UAG A               C
                 GC                  -   U GUAAGCUUUUUUACU
Stem-loop sequence CAUGCACAUUUGCCACCUAGGCCUACAUGUCAGUCUCAGCCGUUACCUGGUCCCACAUCUCAUUUUUUCGAAUGAUGAUGAGGCUGGCAUGUGGGUCCGGGUGGCAAAUGUGUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK072133.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*||||||||*||||||||||
targets:2045   AUAUGCCACCCUGACCCACAUG   2066

1.5 Oryza sativa Japonica Group cDNA clone:J013121C18, full insert sequence NA coding protein psRNATarget
XM_015755115.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*||||||||*||||||||||
targets:2125   AUAUGCCACCCUGACCCACAUG   2146

1.5 PREDICTED: Oryza sativa Japonica Group probable folate-biopterin transporter 6 (LOC4347097), mRNA probable folate-biopterin transporter 6(LOC4347097) coding protein psRNATarget
AK119285.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*||||||||*||||||||||
targets:480   AUAUGCCACCCUGACCCACAUG   501

1.5 Oryza sativa Japonica Group cDNA clone:001-130-C11, full insert sequence NA coding protein psRNATarget
CT834317.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  *|||*|=|=|||||||||||||
targets:1136   UUUUCCUAUCCGGACCCACAUG   1157

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113I16, full insert sequence NA coding protein psRNATarget
XM_015770681.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*|||||=||*||||||||||
targets:1285   AUAUGCCAUCCUGACCCACAUG   1306

2.5 PREDICTED: Oryza sativa Japonica Group urease accessory protein F (LOC4328424), transcript variant X3, mRNA urease accessory protein F(LOC4328424) coding protein psRNATarget
XM_015759579.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*|||||=||*||||||||||
targets:3559   AUAUGCCAUCCUGACCCACAUG   3580

2.5 PREDICTED: Oryza sativa Japonica Group probable disease resistance protein At1g58602 (LOC4348212), transcript variant X2, mRNA probable disease resistance protein At1g58602(LOC4348212) coding protein psRNATarget
XM_015759577.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*|||||=||*||||||||||
targets:3578   AUAUGCCAUCCUGACCCACAUG   3599

2.5 PREDICTED: Oryza sativa Japonica Group probable disease resistance protein At1g58602 (LOC4348212), transcript variant X1, mRNA probable disease resistance protein At1g58602(LOC4348212) coding protein psRNATarget
XM_015770680.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*|||||=||*||||||||||
targets:1296   AUAUGCCAUCCUGACCCACAUG   1317

2.5 PREDICTED: Oryza sativa Japonica Group urease accessory protein F (LOC4328424), transcript variant X2, mRNA urease accessory protein F(LOC4328424) coding protein psRNATarget
XM_015770678.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*|||||=||*||||||||||
targets:1287   AUAUGCCAUCCUGACCCACAUG   1308

2.5 PREDICTED: Oryza sativa Japonica Group urease accessory protein F (LOC4328424), transcript variant X1, mRNA urease accessory protein F(LOC4328424) coding protein psRNATarget
XM_015759581.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*|||||=||*||||||||||
targets:3731   AUAUGCCAUCCUGACCCACAUG   3752

2.5 PREDICTED: Oryza sativa Japonica Group probable disease resistance protein At1g58602 (LOC4348212), transcript variant X4, mRNA probable disease resistance protein At1g58602(LOC4348212) coding protein psRNATarget
XM_015759580.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*|||||=||*||||||||||
targets:3736   AUAUGCCAUCCUGACCCACAUG   3757

2.5 PREDICTED: Oryza sativa Japonica Group probable disease resistance protein At1g58602 (LOC4348212), transcript variant X3, mRNA probable disease resistance protein At1g58602(LOC4348212) coding protein psRNATarget
XM_015759582.1
ncRNA:22   UAAACGGUGGGCCUGGGUGUAC   1
  ||*|||||=||*||||||||||
targets:3754   AUAUGCCAUCCUGACCCACAUG   3775

2.5 PREDICTED: Oryza sativa Japonica Group probable disease resistance protein At1g58602 (LOC4348212), transcript variant X5, mRNA probable disease resistance protein At1g58602(LOC4348212) coding protein psRNATarget