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BaseInfo

ncRNA ID	novel_zma_miR12036
Species	Zea mays
Class	miRNA
Genome position	Chr1:17311296-17311373 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	55 - UUUAGGCCCUGUUUGUUUCAGAUU - 78
Stem-loop(if miRNA)	--UUC                       CUC       A      GAAACAAACAGGGCUUAAAUCUC   CUAUAUA A      |||||||||||||||||||||||   |||||||      CUUUGUUUGUCCCGGAUUUAGAG   GAUAUAU U UUAGA                       AAU       U
Stem-loop sequence	UUCGAAACAAACAGGGCUUAAAUCUCCUCCUAUAUAAAUUUAUAUAGUAAGAGAUUUAGGCCCUGUUUGUUUCAGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019132.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||*|*||||||||||||||||||| targets:117   AAGCCGAAACAAACAGGGCCUAAA   140 Target Full Sequence	0.0	Zea mays clone Contig767.F mRNA sequence	NA	coding protein	psRNATarget
XM_008651543.2	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||*=|||||||||||*|||||||= targets:56   AAGUUGAAACAAACACGGCCUAAG   79 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657517.2	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||*|*|||||||||||||||||== targets:2583   AAGCCGAAACAAACAGGGCCUAGG   2606 Target Full Sequence	2.5	PREDICTED: Zea mays Protein translocase subunit SECA2 chloroplastic (LOC103634940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537643.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||*|*|||||||||||||||||*| targets:893   AAGCCGAAACAAACAGGGCCUAUA   916 Target Full Sequence	1.5	PREDICTED: Zea mays 50S ribosomal protein L28, chloroplastic-like (LOC109939456), mRNA	NA	coding protein	psRNATarget
BT064108.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||---|||||||||=||||||||= targets:535   AA---GAAACAAACGGGGCCUAAG   555 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0138G05 mRNA, complete cds	NA	coding protein	psRNATarget
BT017844.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||---|||||||||=||||||||= targets:1008   AA---GAAACAAACGGGGCCUAAG   1028 Target Full Sequence	2.5	Zea mays clone EL01N0510C06.c mRNA sequence	NA	coding protein	psRNATarget
XM_020544955.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||---|||||||||=||||||||= targets:1530   AA---GAAACAAACGGGGCCUAAG   1550 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274381 (LOC100274381), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042896.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||---|||||||||=||||||||= targets:1568   AA---GAAACAAACGGGGCCUAAG   1588 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0059L04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148741.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   ||---|||||||||=||||||||= targets:1568   AA---GAAACAAACGGGGCCUAAG   1588 Target Full Sequence	2.5	Zea mays uncharacterized LOC100274381 (LOC100274381), mRNA	NA	coding protein	psRNATarget
NM_001149779.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   =|***|||||||||=||||||||= targets:192   GAAAGGAAACAAACGGGGCCUAAG   215 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275779 (LOC100275779), mRNA	NA	coding protein	psRNATarget
EU958050.1	ncRNA:24   UUAGACUUUGUUUGUCCCGGAUUU   1   =|***|||||||||=||||||||= targets:192   GAAAGGAAACAAACGGGGCCUAAG   215 Target Full Sequence	2.5	Zea mays clone 1670548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget