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BaseInfo

ncRNA ID	novel_zma_miR12029
Species	Zea mays
Class	miRNA
Genome position	Chr9:65015500-65015635 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAGAAAACCGUCACUAGAAAUCGU - 24
Stem-loop(if miRNA)	--    A                  UAA     C U  U               C  AUG  -     C   AAGA AACCGUCACUAGAAAUCG   UUCUA A AC GUUCCUUAAGAAAAC GC   UA AAAUU C   |||| ||||||||||||||||||   ||||| | || ||||||||||||||| ||   || |||||   UUCU UUGGCAGUGAUCUUUAGC   AAGAU U UG CAAGGAAUUCUUUUG CG   AU UUUAG A AA    A                  -UA     A C  C               A  AAA  C     U
Stem-loop sequence	AAGAAAACCGUCACUAGAAAUCGUAAUUCUACAUACUGUUCCUUAAGAAAACCGCAUGUAAAAUUCCAUGAUUUCUAAAAGCAGUUUUCUUAAGGAACCGUCUAUAGAAAUCGAUUUCUAGUGACGGUUAUCUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163445.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||||||||=|||||||||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||||||||=|||||||||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||||||||=|||||||||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102 Target Full Sequence	1.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||||||||=|||||||||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.5	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||||||||=|||||||||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.5	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||||||||=|||||||||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.5	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
JB163487.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   *||||||||||||=|||||||||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.5	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235156.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   *||||||||||||=|||||||||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.5	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   *||||||||||||=|||||||||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30 Target Full Sequence	1.5	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||=|||||=|||||||||| targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102 Target Full Sequence	2.5	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||=|||||=|||||||||| targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102 Target Full Sequence	2.5	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||=|||||=|||||||||| targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102 Target Full Sequence	2.5	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
HI403054.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   **|||||||||||=|||||||||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55 Target Full Sequence	1.5	Sequence 1179 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235184.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   **|||||||||||=|||||||||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55 Target Full Sequence	1.5	Sequence 1179 from Patent EP2985353	NA	coding protein	psRNATarget
JB163515.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   **|||||||||||=|||||||||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55 Target Full Sequence	1.5	Sequence 1179 from Patent EP2559767	NA	coding protein	psRNATarget
EU943186.1	ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1   |=|||||*|||||=|||||||||| targets:1966   AUGAUUUGUAGUGGCGGUUUUCUU   1989 Target Full Sequence	2.5	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
AY109131.2	ncRNA:24   UGCUAAAGA-UCACUGCCAAAAGAA   1   *||**||||-||||||||||||||* targets:329   UCGUCUUCUGAGUGACGGUUUUCUG   353 Target Full Sequence	3.0	Zea mays PCO093490 mRNA sequence	NA	coding protein	psRNATarget