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BaseInfo

ncRNA ID	novel_zma_miR12025
Species	Zea mays
Class	miRNA
Genome position	Chr9:32050616-32050744 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUUUUAGGACUAGUUUGGCAACCC - 24
Stem-loop(if miRNA)	-AUUUU   A         C   C A         UG  A   CCA     CC        AUU       AGG CUAGUUUGG AAC C AUUUUUUCA  GG UUU   AUUUU  AAGAGAAA   A       ||| ||||||||| ||| | |||||||||  || |||   |||||  ||||||||   A       UCC GAUCAAACC UUG G UAAAAAGGU  UC AAA   UAAAA  UUCUCUUU   C UUUGAU   A         U   C A         GU  A   -AA     AA        AAC
Stem-loop sequence	AUUUUAGGACUAGUUUGGCAACCCAAUUUUUUCAUGGGAUUUCCAAUUUUCCAAGAGAAAAUUAACCAAUUUCUCUUAAAAAAUAAAAAACUUGUGGAAAAAUAGCGUUUCCAAACUAGACCUUAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008660641.2	ncRNA:24   CC-CAACGGUUUGAUCAGGAUUUUA   1   ||-|||*|||||||||||||||||* targets:3189   GGAGUUCCCAAACUAGUCCUAAAAC   3213 Target Full Sequence	2.0	PREDICTED: Zea mays putative coatomer beta subunit family protein (LOC100383405), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT067132.1	ncRNA:24   CC-CAACGGUUUGAUCAGGAUUUUA   1   ||-|||*|||||||||||||||||* targets:1250   GGAGUUCCCAAACUAGUCCUAAAAC   1274 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0204M05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176059.1	ncRNA:24   CC-CAACGGUUUGAUCAGGAUUUUA   1   ||-|||*|||||||||||||||||* targets:1250   GGAGUUCCCAAACUAGUCCUAAAAC   1274 Target Full Sequence	2.0	Zea mays putative coatomer beta subunit family protein (LOC100383405), mRNA	NA	coding protein	psRNATarget
XM_008676590.2	ncRNA:24   CCCAACGGUUUGAUCAGGAUUUUA   1   **|||*|||||||||*|||||||| targets:4100   UAGUUUCCAAACUAGCCCUAAAAU   4123 Target Full Sequence	2.5	PREDICTED: Zea mays Asparagine synthase family protein (si683017d09), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY111004.1	ncRNA:24   CCCAACGGUUUGAUCAGGAUUUUA   1   **||||*||||||||*|||||||| targets:398   NNGUUGGCAAACUAGCCCUAAAAU   421 Target Full Sequence	2.5	Zea mays CL15165_1 mRNA sequence	NA	coding protein	psRNATarget