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BaseInfo

ncRNA ID	novel_zma_miR12011
Species	Zea mays
Class	miRNA
Genome position	Chr9:75938849-75938906 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - GUUUUAGACACUCGGCAAAGUAGC - 24
Stem-loop(if miRNA)	--                C   UU   GAG   UACUUUGCCGAGUGUC AAG  GCC   U   |||||||||||||||| |||  |||   AUGAAACGGCUCACAG UUU  UGG   G CG                A   --   ACU
Stem-loop sequence	UACUUUGCCGAGUGUCCAAGUUGCCGAGUGUCAGGUUUUAGACACUCGGCAAAGUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949560.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   |=|-|||||||||||||||||=|| targets:507   GUU-CUUUGCCGAGUGUCUAAGAC   529 Target Full Sequence	1.5	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   ***|||||||||||||||*||||* targets:627   AAAACUUUGCCGAGUGUCAAAAAG   650 Target Full Sequence	2.5	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   |=|-|||||||||||||||||=|* targets:807   GUU-CUUUGCCGAGUGUCUAAGAA   829 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   *=*=*|||||||||||||*||||* targets:884   UUCGGUUUGCCGAGUGUCAAAAAA   907 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   |=|-|||||||||||||||||=|* targets:807   GUU-CUUUGCCGAGUGUCUAAGAA   829 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   *=*=*|||||||||||||*||||* targets:884   UUCGGUUUGCCGAGUGUCAAAAAA   907 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   |||-||||||||||||||*||||= targets:67   GCU-CUUUGCCGAGUGUCAAAAAU   89 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   |||-||||||||||||||*||||= targets:67   GCU-CUUUGCCGAGUGUCAAAAAU   89 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   |||-||||||||||||||*||||= targets:67   GCU-CUUUGCCGAGUGUCAAAAAU   89 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
EU971646.1	ncRNA:24   CGAUGAAACGGCUCACAGAUUUUG   1   |=**|||||||||||||||||=|* targets:827   GUGUCUUUGCCGAGUGUCUAAGAA   850 Target Full Sequence	2.5	Zea mays clone 368614 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645204.2	ncRNA:24   CGAU----GAAACGGCUCACAGAUUUUG   1   *||=----|||||=|||||||||*|||| targets:3102   ACUGUCAUCUUUGUCGAGUGUCUCAAAC   3129 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:24   CGAU----GAAACGGCUCACAGAUUUUG   1   *||=----|||||=|||||||||*|||| targets:3109   ACUGUCAUCUUUGUCGAGUGUCUCAAAC   3136 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645203.2	ncRNA:24   CGAU----GAAACGGCUCACAGAUUUUG   1   *||=----|||||=|||||||||*|||| targets:3170   ACUGUCAUCUUUGUCGAGUGUCUCAAAC   3197 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget