Search result

BaseInfo

ncRNA ID	novel_zma_miR12008
Species	Zea mays
Class	miRNA
Genome position	Chr9:103554757-103554839 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	1 - AAGUUAUGUAUCUAGAAAAGC - 21
Stem-loop(if miRNA)	--       A     G               CC    C  A   UUUUCUA AUACA AACUUUUGCUAUGUA  UAGA AU G   ||||||| ||||| |||||||||||||||  |||| || U   AAAAGAU UAUGU UUGAAGACGAUAUAU  AUCU UA G CG       C     A               AA    A  C
Stem-loop sequence	UUUUCUAAAUACAGAACUUUUGCUAUGUACCUAGACAUAGUGCAUAUCUAAAUAUAUAGCAGAAGUUAUGUAUCUAGAAAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541969.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   |||||||||||||||||=||| targets:1660   GCUUUUCUAGAUACAUAGCUU   1680 Target Full Sequence	1.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT068355.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||||||=|||||||||| targets:155   ACUUUUCUAGGUACAUAACUU   175 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0127F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176443.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||||||=|||||||||| targets:155   ACUUUUCUAGGUACAUAACUU   175 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383811 (LOC100383811), mRNA	NA	coding protein	psRNATarget
XM_008676757.2	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   |||||||||||||||||*||| targets:184   GCUUUUCUAGAUACAUACCUU   204 Target Full Sequence	1.5	PREDICTED: Zea mays inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2-like (LOC103651148), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008681255.2	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   ||||||*|||||||||||=|| targets:1490   GCUUUUGUAGAUACAUAAUUU   1510 Target Full Sequence	2.5	PREDICTED: Zea mays probable RNA methyltransferase At5g51130 (LOC103654422), mRNA	NA	coding protein	psRNATarget
EU945560.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   ||*|||||||=|||||||||| targets:790   GCAUUUCUAGGUACAUAACUU   810 Target Full Sequence	2.5	Zea mays clone 277684 mRNA sequence	NA	coding protein	psRNATarget
XM_020543730.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   |||||||||||*||||||||* targets:468   GCUUUUCUAGACACAUAACUC   488 Target Full Sequence	2.5	PREDICTED: Zea mays RING zinc finger protein-like (LOC100285712), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042146.2	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||||||||||||*|||| targets:129   ACUUUUCUAGAUACAUUACUU   149 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0146F01 mRNA, complete cds	NA	coding protein	psRNATarget
BT067945.2	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *=||||||||||||||*|||| targets:1347   UUUUUUCUAGAUACAUUACUU   1367 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0007G15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549535.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||*||*||||||||||| targets:2243   ACUUUUAUAUAUACAUAACUU   2263 Target Full Sequence	2.5	PREDICTED: Zea mays Peptidase M50 family protein (LOC100272369), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674116.2	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||*||*||||||||||| targets:1950   ACUUUUAUAUAUACAUAACUU   1970 Target Full Sequence	2.5	PREDICTED: Zea mays Peptidase M50 family protein (LOC100272369), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674117.2	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||*||*||||||||||| targets:1946   ACUUUUAUAUAUACAUAACUU   1966 Target Full Sequence	2.5	PREDICTED: Zea mays Peptidase M50 family protein (LOC100272369), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT038578.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||*||*||||||||||| targets:1612   ACUUUUAUAUAUACAUAACUU   1632 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0287P14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146850.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||*||*||||||||||| targets:1612   ACUUUUAUAUAUACAUAACUU   1632 Target Full Sequence	2.5	Zea mays Peptidase M50 family protein (LOC100272369), mRNA	NA	coding protein	psRNATarget
XM_020549537.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||*||*||||||||||| targets:1582   ACUUUUAUAUAUACAUAACUU   1602 Target Full Sequence	2.5	PREDICTED: Zea mays Peptidase M50 family protein (LOC100272369), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549536.1	ncRNA:21   CGAAAAGAUCUAUGUAUUGAA   1   *|||||*||*||||||||||| targets:1577   ACUUUUAUAUAUACAUAACUU   1597 Target Full Sequence	2.5	PREDICTED: Zea mays Peptidase M50 family protein (LOC100272369), transcript variant X4, mRNA	NA	coding protein	psRNATarget