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BaseInfo

ncRNA ID novel_zma_miR12005
Species Zea mays
Class miRNA
Genome position Chr9:115819417-115819456 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 19
Mature sequence(if miRNA) 1 - GAUUCUGAGCUCUGGGGCU - 19
Stem-loop(if miRNA) --  G     -GA      U
  CU CGGAG   GGAAUC U
  || |||||   |||||| U
  GG GUCUC   UCUUAG G
UC  G     GAG      U
Stem-loop sequence CUGCGGAGGAGGAAUCUUUGUGAUUCUGAGCUCUGGGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ106860.1
ncRNA:19   UCGGGGUCUCGAGUCUUAG   1
  |||||||||||||||=|||
targets:60   AGCCCCAGAGCUCAGGAUC   78

1.5 TSA: Zea mays contig42518, mRNA sequence NA coding protein psRNATarget