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BaseInfo

ncRNA ID	novel_zma_miR11994
Species	Zea mays
Class	miRNA
Genome position	Chr9:11388034-11388107 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	51 - AUCUCAAUCCCACCCAAUACACUC - 74
Stem-loop(if miRNA)	--A      A            CC  UUUAAAUCCAU    UGUAUU GGUGGGAUUGAG  GG           A    |||||| ||||||||||||  ||    ACAUAA CCACCCUAACUC  CC           A CUC      C            UA  UAAAACUGAAC
Stem-loop sequence	AUGUAUUAGGUGGGAUUGAGCCGGUUUAAAUCCAUAACAAGUCAAAAUCCAUCUCAAUCCCACCCAAUACACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU946469.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   |||*|||||||||||||||||||* targets:723   GAGGGUAUUGGGUGGGAUUGAGAC   746 Target Full Sequence	1.0	Zea mays clone 313172 mRNA sequence	NA	coding protein	psRNATarget
JB169035.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ||||||||||*|||||||||*||| targets:22   GAGUGUAUUGAGUGGGAUUGUGAU   45 Target Full Sequence	2.5	Sequence 6699 from Patent EP2559767	NA	coding protein	psRNATarget
HI408574.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ||||||||||*|||||||||*||| targets:22   GAGUGUAUUGAGUGGGAUUGUGAU   45 Target Full Sequence	2.5	Sequence 6699 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240704.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ||||||||||*|||||||||*||| targets:22   GAGUGUAUUGAGUGGGAUUGUGAU   45 Target Full Sequence	2.5	Sequence 6699 from Patent EP2985353	NA	coding protein	psRNATarget
EU951778.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ||||||||||*|||||||||*||| targets:395   GAGUGUAUUGAGUGGGAUUGUGAU   418 Target Full Sequence	2.5	Zea mays clone 999960 mRNA sequence	NA	coding protein	psRNATarget
EU941886.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||*| targets:87   ACAUGUAUUGGGUGGGAUUGAGCU   110 Target Full Sequence	1.5	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
HI408804.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:7   ACAUGUAUUGGGUGGGAUUGAGCC   30 Target Full Sequence	2.5	Sequence 6929 from Patent EP2074227	NA	coding protein	psRNATarget
JB169265.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:7   ACAUGUAUUGGGUGGGAUUGAGCC   30 Target Full Sequence	2.5	Sequence 6929 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240934.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:7   ACAUGUAUUGGGUGGGAUUGAGCC   30 Target Full Sequence	2.5	Sequence 6929 from Patent EP2985353	NA	coding protein	psRNATarget
BT035580.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||*| targets:1185   ACAUGUAUUGGGUGGGAUUGAGCU   1208 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||*| targets:1185   ACAUGUAUUGGGUGGGAUUGAGCU   1208 Target Full Sequence	1.5	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
LQ239020.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:40   ACAUGUAUUGGGUGGGAUUGAGCC   63 Target Full Sequence	2.5	Sequence 5015 from Patent EP2985353	NA	coding protein	psRNATarget
JB167351.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:40   ACAUGUAUUGGGUGGGAUUGAGCC   63 Target Full Sequence	2.5	Sequence 5015 from Patent EP2559767	NA	coding protein	psRNATarget
HI406890.1	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:40   ACAUGUAUUGGGUGGGAUUGAGCC   63 Target Full Sequence	2.5	Sequence 5015 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||*| targets:2297   ACAUGUAUUGGGUGGGAUUGAGCU   2320 Target Full Sequence	1.5	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT041742.2	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:1314   ACAUGUAUUGGGUGGGAUUGAGCC   1337 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0042I18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148155.2	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:1314   ACAUGUAUUGGGUGGGAUUGAGCC   1337 Target Full Sequence	2.5	Zea mays putative MADS-box transcription factor family protein (MADS71), mRNA	NA	coding protein	psRNATarget
XM_008660051.2	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:1532   ACAUGUAUUGGGUGGGAUUGAGCC   1555 Target Full Sequence	2.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS71), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681684.2	ncRNA:24   CUCACAUAACCCACCCUAACUCUA   1   ***|||||||||||||||||||** targets:2824   ACAUGUAUUGGGUGGGAUUGAGCC   2847 Target Full Sequence	2.5	PREDICTED: Zea mays pyrophosphate-energized vacuolar membrane proton pump (LOC103654862), mRNA	NA	coding protein	psRNATarget