Search result

BaseInfo

ncRNA ID	novel_zma_miR11988
Species	Zea mays
Class	miRNA
Genome position	Chr9:136752193-136752306 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	1 - ACUCAUAUCCACCUCAAUCCA - 21
Stem-loop(if miRNA)	--    A        U        UCCAU      UA          G       CU     ACUC UAUCCACC CAAUCCAA     GUGCGU  GAGUGGAUUG GGUGGAA  UAG   |||| |||||||| ||||||||     ||||||  |||||||||| |||||||  ||U   UGAG AUAGGUGG GUUAGGUU     CACGUA  CUCACCUAAU UUACCUU  AUU CG    C        U        -----      UC          G       UU
Stem-loop sequence	ACUCAUAUCCACCUCAAUCCAAUCCAUGUGCGUUAGAGUGGAUUGGGGUGGAACUUAGUUUAUUUUCCAUUGUAAUCCACUCCUAUGCACUUGGAUUGUGGUGGAUACGAGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001156236.1	ncRNA:21   ACCUAACUCCACCUAUACUCA   1   ||*||||||||||=||||||| targets:1023   UGUAUUGAGGUGGGUAUGAGU   1043 Target Full Sequence	2.5	Zea mays partner of Nob1 (LOC100283335), mRNA	NA	coding protein	psRNATarget
EU964338.1	ncRNA:21   ACCUAACUCCACCUAUACUCA   1   ||*||||||||||=||||||| targets:1023   UGUAUUGAGGUGGGUAUGAGU   1043 Target Full Sequence	2.5	Zea mays clone 278070 partner of Nob1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138526.1	ncRNA:21   ACCUAACUCCACCUAUACUCA   1   *||||*||*|||||||||||| targets:183   AGGAUGGACGUGGAUAUGAGU   203 Target Full Sequence	2.5	Zea mays 14-3-3-like protein (LOC100193401), mRNA	NA	coding protein	psRNATarget
BT035652.1	ncRNA:21   ACCUAACUCCACCUAUACUCA   1   *||||*||*|||||||||||| targets:183   AGGAUGGACGUGGAUAUGAGU   203 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0074N15 mRNA, complete cds	NA	coding protein	psRNATarget
EU963354.1	ncRNA:21   ACCUAACUCCACCUAUACUCA   1   *||||*||*|||||||||||| targets:233   AGGAUGGACGUGGAUAUGAGU   253 Target Full Sequence	2.5	Zea mays clone 261318 14-3-3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
AY104769.1	ncRNA:21   ACCUAACUCCACCUAUACUCA   1   *||||*||*|||||||||||| targets:214   AGGAUGGACGUGGAUAUGAGU   234 Target Full Sequence	2.5	Zea mays PCO122666 mRNA sequence	NA	coding protein	psRNATarget